Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005906 (ydjI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005906 showshow history
Names
ydjI JW1762 ECK1771 b1773
Product
L-glycero-L-galacto-octuluronate-1-phosphate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1856933 1857769 837 279
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR000771 (IPR000771 Fructose-bisphosphate aldolase, class-II) Apr 2008
Automated Process Approved PF01116 (PF01116 Fructose-bisphosphate aldolase class-II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydjI Published Annotation - Swiss-Prot Accession Number: P77704 Aug 2002
Person Approved synonym JW1762 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1771 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1773 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-glycero-L-galacto-octuluronate-1-phosphate aldolase Published Annotation - EcoCyc Accession Number: G6960
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted aldolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative aldolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative fructose-bisphosphate aldolase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF01116 Fructose-bisphosphate aldolase class-II Protein Sequence Similarity - PFAM Model Name: PF01116
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000771 Fructose-bisphosphate aldolase, class-II Protein Sequence Similarity - InterPro Domain: IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 4.1.2.13 Protein Sequence Similarity - InterPro Domain: IPR000771
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Uncurated EC number 4.1.2.- Published Annotation - Database Name: EC2GO: GO:0016832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005906 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13485 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946291 Published Annotation - Entrez Gene Database ID: 946291
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788072 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77704 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77704 Published Annotation - Swiss-Prot Accession Number: P77704 Jan 2006
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative aldolase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74843.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003976 ydjI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004416 ydjI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003987 ydjI CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002587 fbaA_2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007827 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001733 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010352 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001682 ydjI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002617 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007550 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078296 ydjI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001989 fba2 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007293 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002020 ydjI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006434 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006290 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005883 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010184 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008744 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007517 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007337 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007561 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010770 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010165 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007731 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008779 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008489 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026566 ydjI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006686 fbaA_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006532 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002178 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001820 ydjI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002293 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002137 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002129 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001984 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176141 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001975 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001417 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132466 ydjI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004088 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001976 ydjI CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001534 ydjI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006327 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005727 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005541 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008267 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007543 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004882 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007534 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008125 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006100 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072641 CDS
Person Approved Go view Shigella flexneri 301 ABT-0255975 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001534 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242269 fba CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004515 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007446 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003431 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128634 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005907 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007280 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001520 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006069 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007782 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033664 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006800 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004331 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003976 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006752 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008063 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003921 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004757 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000163 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012129 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004198 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1851933 to 1862769
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005891pncACDSforward18518871852528Downstream
ABE-0285467repeat_regionforward18525621852597Downstream
ABE-0005894ydjECDScomplement18526211853979Downstream
ABE-0005897ydjFCDScomplement18540961854854Downstream
ABE-0005901ydjGCDScomplement18549911855971Downstream
ABE-0005903ydjHCDScomplement18559811856928Downstream
ABE-0005906ydjICDScomplement18569331857769Matches
ABE-0005908ydjJCDScomplement18577901858833Upstream
ABE-0005910ydjKCDScomplement18588501860229Upstream
ABE-0005912ydjLCDScomplement18602561861332Upstream
ABE-0005914yeaCCDScomplement18617021861974Upstream
ABE-0005916msrBCDScomplement18620161862429Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.