Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005916 (msrB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005916 showshow history
Names
msrB yeaA JW1767 ECK1776 b1778
Product
methionine sulfoxide reductase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1862016 1862429 414 138
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000649
EnteroFam0005916: Trusted threshold=353.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011057 (IPR011057 Mss4-like superfamily) Apr 2008
Automated Process Approved IPR002579 (IPR002579 Peptide methionine sulphoxide reductase MrsB) Apr 2008
Automated Process Approved IPR028427 (IPR028427 Peptide methionine sulfoxide reductase) Jul 2018
Automated Process Approved PF01641 (PF01641 SelR domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0030091 protein repair GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002579
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0033743 peptide-methionine (R)-S-oxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002579
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008113 peptide-methionine (S)-S-oxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002579
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name msrB Published Annotation - PubMed ID: 11677230
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved synonym JW1767 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yeaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1776 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1778 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product methionine sulfoxide reductase B Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name peptide-methionine (R)-S-oxide reductase Published Annotation - Swiss-Prot Accession Number: P0A746
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Person Approved EnteroFam EnteroFam0005916: Trusted threshold=353.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000649
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011057 Mss4-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011057
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01641 SelR domain Protein Sequence Similarity - PFAM Model Name: PF01641
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028427 Peptide methionine sulfoxide reductase Protein Sequence Similarity - InterPro Domain: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002579 Peptide methionine sulphoxide reductase MrsB Protein Sequence Similarity - InterPro Domain: IPR002579
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.8.4.12 Published Annotation - Swiss-Prot Accession Number: P0A746
Reference: Escherichia coli K-12 		Mar 2007
Automated Process Uncurated EC number 1.8.4.- Published Annotation - Database Name: EC2GO: GO:0033743, GO:0016671
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12394 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A746 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005916 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788077 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947188 Published Annotation - Entrez Gene Database ID: 947188
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A746 Published Annotation - Swiss-Prot Accession Number: P0A746 Jan 2006
Automated Process Approved protein id AAC74848.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: no aa change Experimental - GenBank Accession Number: AG613224
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0030091 protein repair GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002579
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0033743 peptide-methionine (R)-S-oxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002579
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR028427
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008113 peptide-methionine (S)-S-oxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002579
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000649 msrB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001105 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001207 msrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001063 msrB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000751 msrB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001188 msrB CDS
Ortholog
Automated Process Approved Go view Brenneria salicis ATCC 15712 [T] AMK-0002836 CDS
Automated Process Approved Go view Brenneria sp. EniD312 AKG-0002092 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001707 msrB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002420 msrB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001998 msrB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002580 msrB CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0007025 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019582 msrB CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0001910 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002263 msrB CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0302153 msrB CDS
Automated Process Approved Go view Erwinia amylovora ATCC BAA-2158 APN-0002150 msrB CDS
Person Uncurated Go view Erwinia amylovora CFBP 1430 AKH-0002044 yeaA CDS
Person Uncurated Go view Erwinia billingiae 661 [T] AKT-0002484 msrB CDS
Person Uncurated Go view Erwinia pyrifoliae DSM 12163 [T] AJZ-0001815 yeaA CDS
Person Uncurated Go view Erwinia pyrifoliae Ep1/96 AKA-0001693 msrB CDS
Person Uncurated Go view Erwinia sp. Ejp617 AOU-0003150 msrB CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001620 msrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007832 msrB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001738 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010359 msrB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001686 yeaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002612 msrB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007545 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008181 msrB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009509 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078302 yeaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001994 msrB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009733 msrB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002025 msrB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006439 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006295 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005888 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010189 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008749 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007512 msrB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007342 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007556 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010765 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009976 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010170 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007726 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008774 msrB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008494 msrB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026571 yeaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006681 msrB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006537 msrB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002183 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001673 msrB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001825 yeaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002288 msrB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002142 msrB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002124 msrB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001990 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176201 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001980 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001412 msrB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132471 msrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004083 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001981 msrB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001771 msrB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002688 msrB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001202 yeaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004190 msrB CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0006719 CDS
Automated Process Approved Go view Pantoea agglomerans IG1 APM-0001485 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0001450 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0001458 msrB CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0002619 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0002175 msrB CDS
Person Uncurated Go view Pantoea ananatis LMG 5342 APQ-0002109 msrB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002037 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009950 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0001691 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286866 CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0005313 yeaA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062608 msrB CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0001258 msrB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001794 msrB CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0002330 msrB CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0006829 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142707 msrB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001810 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006058 msrB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001759 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001528 yeaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006334 msrB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005745 yeaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005555 yeaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008273 msrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005782 msrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008008 msrB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004797 msrB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007536 msrB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004875 msrB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005769 msrB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005021 msrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001562 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001553 yeaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002066 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006010 msrB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007541 msrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005473 msrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008137 msrB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108720 msrB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082884 msrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001569 yeaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094411 yeaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008146 msrB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008118 msrB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006182 msrB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003050 msrB CDS
Person Approved Go view Shigella boydii 227 ADV-0001458 yeaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006095 msrB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001716 yeaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072636 yeaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087769 yeaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001529 yeaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001504 yeaA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002073 VC1998 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004479 msrB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003322 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006644 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002692 msrB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002475 msrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001706 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238987 msrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006463 msrB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001834 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004648 msrB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001291 msrB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122364 msrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005582 msrB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008013 msrB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001822 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008715 msrB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007878 msrB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031875 msrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005824 msrB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001959 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001164 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007615 msrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005957 msrB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002166 msrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002553 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002476 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012103 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004204 msrB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22575mutantTn5 InsertionRequest the StrainABE-0005916msrByeaA::Tn5KAN-I-SceI at position 85 in Plus orientation ,+ pKD460Blattner Laboratory
FB23149mutantTn5 InsertionRequest the StrainABE-0005916msrByeaA::Tn5KAN-I-SceI at position 85 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1857016 to 1867429
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005906ydjICDScomplement18569331857769Downstream
ABE-0005908ydjJCDScomplement18577901858833Downstream
ABE-0005910ydjKCDScomplement18588501860229Downstream
ABE-0005912ydjLCDScomplement18602561861332Downstream
ABE-0005914yeaCCDScomplement18617021861974Downstream
ABE-0005916msrBCDScomplement18620161862429Matches
ABE-0005920gapACDSforward18627711863766Upstream
ABE-0005923yeaDCDSforward18638501864734Upstream
ABE-0285468repeat_regionforward18647531864773Upstream
ABE-0005925yeaECDScomplement18647821865636Upstream
ABE-0005928mipACDScomplement18657261866472Upstream
ABE-0005935yeaGCDSforward18669081868842Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.