Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005920 (gapA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005920 showshow history
Names
gapA JW1768 ECK1777 gad b1779
Product
glyceraldehyde-3-phosphate dehydrogenase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1862771 1863766 996 332
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000650
EnteroFam0005920: Trusted threshold=988.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000173 (IPR000173 (DEPRECATED) Glyceraldehyde 3-phosphate dehydrogenase) Apr 2008
Automated Process Approved IPR006424 (IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I) Apr 2008
Automated Process Approved IPR020829 (IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain) Jul 2018
Automated Process Approved IPR020828 (IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain) Jul 2018
Automated Process Approved IPR020831 (IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02800 (PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain) Jul 2018
Automated Process Approved PF00044 (PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828, IPR006424, IPR020831
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006424
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828, IPR006424, IPR020831
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008943 (OBSOLETE) glyceraldehyde-3-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gapA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym gad Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1777 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1768 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1779 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glyceraldehyde-3-phosphate dehydrogenase A Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glyceraldehyde-3-phosphate dehydrogenase A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005920: Trusted threshold=988.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000650
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000173 (DEPRECATED) Glyceraldehyde 3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000173
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02800
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF00044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family Protein Sequence Similarity - InterPro Domain: IPR020831
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Protein Sequence Similarity - InterPro Domain: IPR020828
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I Protein Sequence Similarity - InterPro Domain: IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR020829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.2.1.- Published Annotation - Database Name: EC2GO: GO:0016620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.1.12 Published Annotation - Swiss-Prot Accession Number: P0A9B2 Feb 2006
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947679 Published Annotation - Entrez Gene Database ID: 947679
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A9B2 Published Annotation - Swiss-Prot Accession Number: P0A9B2 Jan 2006
Automated Process Approved db xref GI:1788079 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005920 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9B2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10367 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006096 - glycolysis; GO_process: GO:0008615 - pyridoxine biosynthetic process; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74849.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828, IPR006424, IPR020831
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006424
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020829, IPR020828, IPR006424, IPR020831
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008943 (OBSOLETE) glyceraldehyde-3-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000650 gapA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001106 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000269 gapA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000223 gapA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000307 gapA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001328 gapA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002837 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002093 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129568 gapA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105002 gapA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104407 gapA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001706 gapA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002421 gap CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001997 gapA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002579 gapA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007026 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019580 gapA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001909 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002262 gap CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302155 gapA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002151 gapA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001618 gapA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004343 gapA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007833 gapA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001739 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010360 gap CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001687 gapA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002611 gapA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007544 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008182 gapA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009508 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078303 gapA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001995 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002313 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007287 gapA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002026 gapA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006440 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006296 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005889 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010190 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008750 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007511 gapA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007343 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007555 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010764 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009977 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010171 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008773 gapA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008495 gapA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026572 gapA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006680 gapA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006538 gapA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002184 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001674 gapA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001826 gapA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002287 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002143 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002123 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001991 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001981 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001411 gapA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132472 gapA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004082 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001982 gapA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001772 gapA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002687 gapA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001201 gapA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004189 gapA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006720 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001486 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001449 gapA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001459 gapA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002618 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002176 gapA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002036 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009951 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001690 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286867 gapA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005314 gapA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062609 gapA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001465 gapA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000609 gapA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002331 gapA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006828 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142710 gapA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006059 gapA CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001527 gapA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006335 gapA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005747 gapA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005557 gapA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005781 gapA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008007 gapA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004796 gapA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007535 gapA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004874 gapA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005768 gapA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005022 gapA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001563 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001554 gapA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002068 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006009 gapA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007542 gapA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005472 gapA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008136 gapA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108722 gapA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082883 gapA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001567 gapA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094407 gapA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008147 gapA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008117 gapA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006183 gapA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003049 gapA CDS
Person Approved Go view Shigella boydii 227 ADV-0001457 gapA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007437 gapA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006094 gapA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001715 gapA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072635 gapA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087768 gapA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001528 gapA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001503 gapA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002075 VC2000 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000151 gapA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004481 gapA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003321 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006646 gapA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002691 gapA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002476 gapA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001705 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238986 gapA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006464 gapA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001833 gapA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004646 gapA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001292 gapA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122361 gapA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005581 gapA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008015 gapA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008716 gapA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007877 gapA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031876 gapA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005825 gapA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001958 gapA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001165 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007617 gapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005958 gapA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002165 gapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002552 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002477 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012099 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004205 gapA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1857771 to 1868766
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005908ydjJCDScomplement18577901858833Upstream
ABE-0005910ydjKCDScomplement18588501860229Upstream
ABE-0005912ydjLCDScomplement18602561861332Upstream
ABE-0005914yeaCCDScomplement18617021861974Upstream
ABE-0005916msrBCDScomplement18620161862429Upstream
ABE-0005920gapACDSforward18627711863766Matches
ABE-0005923yeaDCDSforward18638501864734Downstream
ABE-0285468repeat_regionforward18647531864773Downstream
ABE-0005925yeaECDScomplement18647821865636Downstream
ABE-0005928mipACDScomplement18657261866472Downstream
ABE-0005935yeaGCDSforward18669081868842Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.