Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005925 (yeaE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005925 showshow history
Names
yeaE JW1770 ECK1779 b1781
Product
methylglyoxal reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1864782 1865636 855 285
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001395 (IPR001395 (DEPRECATED) Aldo/keto reductase) Apr 2008
Automated Process Approved IPR023210 (IPR023210 NADP-dependent oxidoreductase domain) Jul 2018
Automated Process Approved IPR036812 (IPR036812 NADP-dependent oxidoreductase domain superfamily) Jul 2018
Automated Process Approved PF00248 (PF00248 Aldo/keto reductase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yeaE Published Annotation - Swiss-Prot Accession Number: P31547 Aug 2002
Person Approved synonym ECK1779 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1770 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1781 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product methylglyoxal reductase Published Annotation - EcoCyc Accession Number: G6967
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Automated Process Approved alternate product name aldo-keto reductase, methylglyoxal to acetol, NADPH-dependent Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name predicted oxidoreductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative oxidoreductase, NAD(P)-linked Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative an aldehyde reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR023210 NADP-dependent oxidoreductase domain Protein Sequence Similarity - InterPro Domain: IPR023210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001395 (DEPRECATED) Aldo/keto reductase Protein Sequence Similarity - InterPro Domain: IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00248 Aldo/keto reductase family Protein Sequence Similarity - PFAM Model Name: PF00248
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036812 NADP-dependent oxidoreductase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005925 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946302 Published Annotation - Entrez Gene Database ID: 946302
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76234 Published Annotation - Swiss-Prot Accession Number: P76234 Jan 2006
Automated Process Approved db xref GI:1788081 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76234 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13491 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative an aldehyde reductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74851.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001918 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002579 yeaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002715 yeaE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009007 yeaE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002622 yeaE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001704 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001995 ytbE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002577 ytbE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007028 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019578 yeaE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001907 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302161 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002153 yeaE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001616 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001741 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010362 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001689 yeaE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002609 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007542 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008184 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009506 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078305 yeaE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001997 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002315 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007285 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010613 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002028 yeaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006442 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006298 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005891 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010192 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008752 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007509 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007345 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007553 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010762 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009979 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010173 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009820 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008771 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008497 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026574 yeaE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006678 yvgN_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006540 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002186 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001676 yeaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001828 yeaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002285 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002145 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002121 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001993 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176205 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0001983 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001409 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132474 yeaE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004080 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001984 yeaE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001199 yeaE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004187 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006722 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001488 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001447 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001461 yeaE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002616 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002178 yeaE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002034 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009953 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001688 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286869 yeaE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005316 yeaE CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062611 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001257 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001795 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002333 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006826 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003758 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006061 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001764 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001523 yeaE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006337 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005754 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005564 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008517 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005779 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008005 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004794 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007533 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004872 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005766 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005024 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001556 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006007 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007544 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005470 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008134 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0108726 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082881 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001564 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094402 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008149 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008115 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006185 CDS
Person Approved Go view Shigella boydii 227 ADV-0001452 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007440 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006091 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001713 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072633 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087766 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001526 CDS
Person Approved Go view Shigella sonnei 046 ADD-0001499 yeaE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002600 dkgB_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22576mutantTn5 InsertionRequest the StrainABE-0005925yeaEb1781::Tn5KAN-I-SceI at position 62 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1859782 to 1870636
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005910ydjKCDScomplement18588501860229Downstream
ABE-0005912ydjLCDScomplement18602561861332Downstream
ABE-0005914yeaCCDScomplement18617021861974Downstream
ABE-0005916msrBCDScomplement18620161862429Downstream
ABE-0005920gapACDSforward18627711863766Downstream
ABE-0005923yeaDCDSforward18638501864734Downstream
ABE-0285468repeat_regionforward18647531864773Downstream
ABE-0005925yeaECDScomplement18647821865636Matches
ABE-0005928mipACDScomplement18657261866472Upstream
ABE-0005935yeaGCDSforward18669081868842Upstream
ABE-0285469repeat_regionforward18688921868930Upstream
ABE-0005938yeaHCDSforward18689551870238Upstream
ABE-0005941cdgICDSforward18703851871860Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.