Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005972 (dgcP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005972 showshow history
Names
dgcP JW5292 ECK1792 yeaP b1794
Product
diguanylate cyclase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1877715 1878740 1026 342
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000160 (IPR000160 GGDEF domain) Apr 2008
Automated Process Approved IPR003018 (IPR003018 GAF domain) Apr 2008
Automated Process Approved IPR029787 (IPR029787 Nucleotide cyclase) Jul 2018
Automated Process Approved PF00990 (PF00990 Diguanylate cyclase, GGDEF domain) Jul 2018
Automated Process Approved PF13185 (PF13185 GAF domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003018
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name dgcP Published Annotation - PubMed ID: 26148715
Reference: Escherichia coli K-12 MG1655 		Sep 2018
Person Approved synonym ECK1792 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yeaP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5292 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1794 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product diguanylate cyclase Published Annotation - EcoCyc Accession Number: G6980
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted diguanylate cyclase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR000160 GGDEF domain Protein Sequence Similarity - InterPro Domain: IPR000160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003018 GAF domain Protein Sequence Similarity - InterPro Domain: IPR003018
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00990 Diguanylate cyclase, GGDEF domain Protein Sequence Similarity - PFAM Model Name: PF00990
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13185 GAF domain Protein Sequence Similarity - PFAM Model Name: PF13185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029787 Nucleotide cyclase Protein Sequence Similarity - InterPro Domain: IPR029787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081977 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005972 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948969 Published Annotation - Entrez Gene Database ID: 948969
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76245 Published Annotation - Swiss-Prot Accession Number: P76245 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76245 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13502 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74864.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by dsrA; expression is increased in strain overexpressing dsrA Experimental - PubMed ID: 15342588
Reference: Escherichia coli K-12 M182 		Oct 2005
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003018
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004638 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003670 yeaP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003824 dgcP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009828 yeaP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003373 dgcP CDS
Ortholog
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002247 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008952 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001753 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010375 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001700 yeaP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002596 CDS
Person Approved Go view Escherichia coli ATCC 8739 AEM-0007526 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010447 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009493 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078318 dgcP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002011 yeaP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002328 yeaP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007272 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010627 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002041 yeaP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006455 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006312 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005905 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010205 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008765 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007496 CDS
Person Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007358 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007540 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010748 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009992 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010187 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008758 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008510 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026587 yeaP pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006665 yeaP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006554 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001689 yeaP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001841 yeaP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002272 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002158 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002108 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002006 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176222 CDS
Person Approved Go view Escherichia coli SE11 AFS-0001996 CDS
Person Approved Go view Escherichia coli SMS-3-5 AFT-0001396 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132487 yeaP pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004066 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001998 yeaP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003014 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001176 yeaP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004174 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003707 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006084 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006076 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001953 yeaP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072620 yeaP CDS
Person Approved Go view Shigella flexneri 301 ABT-0087756 yeaP CDS
Person Approved Go view Shigella sonnei 046 ADD-0001484 yeaP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22578mutantTn5 InsertionRequest the StrainABE-0005972dgcPyeaP::Tn5KAN-I-SceI at position 812 in Minus orientation ,+ pKD460Blattner Laboratory
FB23154mutantTn5 InsertionRequest the StrainABE-0005972dgcPyeaP::Tn5KAN-I-SceI at position 812 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1872715 to 1883740
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005943dgcJCDSforward18720411873531Upstream
ABE-0005945yeaKCDSforward18735741874077Upstream
ABE-0005947yoaICDScomplement18740781874182Upstream
ABE-0005954yeaLCDSforward18743521874798Upstream
ABE-0005956nimRCDScomplement18747551875576Upstream
ABE-0005962nimTCDSforward18756731876854Upstream
ABE-0005964yeaOCDSforward18769091877256Upstream
ABE-0005966yoaFCDScomplement18772781877532Upstream
ABE-0005972dgcPCDSforward18777151878740Matches
ABE-0285219yoaKCDSforward18787731878871Downstream
ABE-0285218yoaJCDSforward18788741878948Downstream
ABE-0005974yeaQCDScomplement18790071879255Downstream
ABE-0005976yoaGCDScomplement18794031879585Downstream
ABE-0005979yeaRCDScomplement18795891879948Downstream
ABE-0005984leuECDScomplement18801211880759Downstream
ABE-0005987dmlRCDScomplement18808861881809Downstream
ABE-0005991dmlACDSforward18819121882997Downstream
ABE-0005995yeaVpseudogeneforward18831511884633Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.