Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006005 (fadD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006005 showshow history
Names
fadD oldD JW1794 ECK1803 b1805
Product
acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1888061 1889746 1686 562
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000657
EnteroFam0006005: Trusted threshold=471.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Apr 2008
Automated Process Approved IPR025110 (IPR025110 AMP-binding enzyme, C-terminal domain) Jul 2018
Automated Process Approved PF13193 (PF13193 AMP-binding enzyme C-terminal domain) Jul 2018
Automated Process Approved PF00501 (PF00501 AMP-binding enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fadD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Automated Process Approved synonym oldD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW1794 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1803 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1805 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase Experimental - PubMed ID: 12034706
Reference: Escherichia coli
Jan 2006
Person Approved alternate product name acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006005: Trusted threshold=471.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000657
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR025110 AMP-binding enzyme, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR025110
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00501 AMP-binding enzyme Protein Sequence Similarity - PFAM Model Name: PF00501
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF13193 AMP-binding enzyme C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF13193
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 6.2.1.3 Published Annotation - Swiss-Prot Accession Number: P69451 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788107 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P69451 Published Annotation - Swiss-Prot Accession Number: P69451 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69451 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0006005 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946327 Published Annotation - Entrez Gene Database ID: 946327
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref EcoGene:EG11530 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Degradation of small molecules: Fatty acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0019395 - fatty acid oxidation; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74875.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001121 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001159 fadD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001507 fadD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002021 fadD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001312 fadD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001213 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002114 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002460 fadD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001548 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004958 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004856 CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0006758 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0061333 fadD pseudogene
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0002092 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003181 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0302228 fadD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002179 fadD CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001592 fadD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004373 fadD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008967 fadD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001760 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010390 fadD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001704 fadD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002586 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007515 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009857 fadD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009300 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078328 fadD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002023 fadD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002343 fadD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010014 fadD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010346 fadD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002049 fadD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006468 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006325 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005919 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010219 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008779 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007483 fadD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007372 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007526 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010734 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010006 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010200 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009792 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008744 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008524 fadD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026599 fadD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006654 fadD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006568 fadD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002225 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001700 fadD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001852 fadD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002257 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002171 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002095 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002016 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176229 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002010 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001382 fadD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132498 fadD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004052 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002006 fadD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001804 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002654 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002329 fadD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000424 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0006761 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001509 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001425 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001481 fadD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002594 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002199 fadD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002014 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009975 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001668 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286894 fadD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005337 fadD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062637 fadD CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0001304 fadD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004527 pseudogene
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0003233 fadD CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0006795 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141695 fadD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004170 fadD-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005490 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002121 fadD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005770 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003984 fadD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003948 fadD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004632 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006380 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005320 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008522 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008528 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005458 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006323 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004460 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001058 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001055 fadD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001407 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006572 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008546 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006045 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007120 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108909 fadD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082773 fadD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002201 fadD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095910 fadD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007507 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006887 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007435 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003016 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266178 fadD-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0001419 fadD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007474 fadD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007868 fadD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001973 fadD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072611 fadD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087750 fadD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001514 fadD CDS
Person Approved Go view Shigella sonnei 046 ADD-0001473 fadD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002060 VC1985 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003915 fadD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000596 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006841 fadD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002664 fadD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002502 fadD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001516 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238890 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006516 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001770 fadD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004567 fadD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001367 fadD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122159 fadD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005503 fadD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008748 fadD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001115 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008147 fadD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005792 fadD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031950 fadD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005904 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001878 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001243 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007675 fadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005985 fadD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002139 fadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002518 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002512 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004094 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20456mutantTn5 InsertionRequest the StrainABE-0006005fadDfadD::Tn5KAN-2 at position 1075 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1883061 to 1894746
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005995yeaVpseudogeneforward18831511884633Downstream
ABE-0005997yeaWCDSforward18846651885789Downstream
ABE-0006000yeaXCDSforward18858451886810Downstream
ABE-0006003rndCDScomplement18868641887991Downstream
ABE-0006005fadDCDScomplement18880611889746Matches
ABE-0006011yeaYCDScomplement18899511890532Upstream
ABE-0006013tsaBCDScomplement18905721891267Upstream
ABE-0006016yoaACDScomplement18913251893235Upstream
ABE-0006020yoaBCDSforward18933671893711Upstream
ABE-0006024yoaCCDSforward18941331894432Upstream
ABE-0006026yoaHCDScomplement18945521894731Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.