Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006054 (manX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006054 showshow history
Names
manX ptsX JW1806 ECK1815 ptsM gptB mpt ptsL b1817
Product
PTS system mannose-specific IIAB component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1902048 1903019 972 324
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000665
EnteroFam0006054: Trusted threshold=838.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004720 (IPR004720 Phosphotransferase system, sorbose subfamily IIB component) Apr 2008
Automated Process Approved IPR004701 (IPR004701 Phosphotransferase system, mannose-type IIA component) Apr 2008
Automated Process Approved IPR013789 (IPR013789 Phosphotransferase system, mannose family IIA component) Apr 2008
Automated Process Approved IPR018455 (IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup) Jul 2018
Automated Process Approved IPR036662 (IPR036662 Phosphotransferase system, mannose-type IIA component superfamily) Jul 2018
Automated Process Approved IPR036667 (IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily) Jul 2018
Automated Process Approved PF03830 (PF03830 PTS system sorbose subfamily IIB component) Jul 2018
Automated Process Approved PF03610 (PF03610 PTS system fructose IIA component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013789
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004720
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013789
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004720, IPR018455, IPR036667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name manX Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ptsL Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym gptB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ptsM Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ptsX Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1806 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1815 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym mpt Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1817 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system mannose-specific IIAB component Experimental - PubMed ID: 8262947
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name fused mannose-specific PTS enzymes: IIA component/IIB component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved alternate product name mannose-specific PTS enzyme Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Uncurated alternate product name PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name PTS enzyme IIAB, mannose-specific Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006054: Trusted threshold=838.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000665
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF03610 PTS system fructose IIA component Protein Sequence Similarity - PFAM Model Name: PF03610
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03830 PTS system sorbose subfamily IIB component Protein Sequence Similarity - PFAM Model Name: PF03830
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013789 Phosphotransferase system, mannose family IIA component Protein Sequence Similarity - InterPro Domain: IPR013789
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004701 Phosphotransferase system, mannose-type IIA component Protein Sequence Similarity - InterPro Domain: IPR004701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004720 Phosphotransferase system, sorbose subfamily IIB component Protein Sequence Similarity - InterPro Domain: IPR004720
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup Protein Sequence Similarity - InterPro Domain: IPR018455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily Protein Sequence Similarity - InterPro Domain: IPR036667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036662 Phosphotransferase system, mannose-type IIA component superfamily Protein Sequence Similarity - InterPro Domain: IPR036662
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P69797 Feb 2006
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P69797 Feb 2006
Person Uncurated MultiFun 4.4.A.6 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Mannose-Fructose-Sorbose (Man) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.116 (transport; substrate; mannose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69797 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788120 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946334 Published Annotation - Entrez Gene Database ID: 946334
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P69797 Published Annotation - Swiss-Prot Accession Number: P69797 Jan 2006
Automated Process Approved db xref EcoGene:EG10567 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS enzyme IIAB, mannose-specific; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74887.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013789
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004720
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013789
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004720, IPR018455, IPR036667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000665 manX CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001144 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001758 manX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001563 manX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001726 manX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001819 manX CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001201 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002148 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002474 manX CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001536 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002600 manX_9 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003248 manX_7 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006748 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020172 manX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002103 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004385 manX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008980 manX CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001772 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010402 manX CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001715 manX CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002574 CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0007501 manX pseudogene
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009870 manX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009287 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078342 manX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002036 manX CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002356 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010026 manX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010334 manX CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002062 manX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006482 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006174 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005934 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010232 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008792 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007469 manX CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007386 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007512 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010721 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010020 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010213 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009778 manX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008538 manX CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026611 manX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006642 manX_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006582 manX CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002237 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001711 manX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001864 manX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002243 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002185 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002081 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002029 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002022 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001370 manX CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132511 manX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004038 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002021 manX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002154 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003035 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002340 manX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000435 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006772 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001525 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001408 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001492 manX CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002582 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002211 manX CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002001 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009986 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001652 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286906 manX CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005354 manX CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062650 manX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001471 manX CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002888 manX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003247 manX CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006784 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143035 manX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005478 manX CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001153 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002137 manX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005758 manX CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003948 manX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003913 manX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004621 manX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006392 manX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005331 manX CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008511 manX CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008517 manX CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005469 manX CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006334 manX CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004449 manX CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001046 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001043 manX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001394 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006584 manX CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008535 manX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006057 manX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007131 manX CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108934 manX CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082762 manX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002214 manX CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095950 manX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007496 manX CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006898 manX CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002954 CDS
Person Approved Go view Shigella boydii 227 ADV-0001354 manX CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007492 manX CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007855 manX CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002266 manX CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072599 manX CDS
Person Approved Go view Shigella flexneri 301 ABT-0087738 manX CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001502 manX CDS
Person Approved Go view Shigella sonnei 046 ADD-0001459 manX CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003444 manX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000621 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005275 gptB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003873 manX_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000111 manX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002129 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238179 manX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005765 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001371 manX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004223 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001657 manX CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121156 manX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007195 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008341 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000803 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008025 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007103 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032278 manX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006250 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002843 manX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001633 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008452 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006348 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001708 manX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002084 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002920 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012484 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004107 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20460mutantTn5 InsertionRequest the StrainABE-0006054manXmanX::Tn5KAN-2 at position 793 in Minus orientation ,+ pKD460Blattner Laboratory
FB20461mutantTn5 InsertionRequest the StrainABE-0006054manXmanX::Tn5KAN-2 at position 793 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1897048 to 1908019
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006039sdaACDSforward18969321898296Upstream
ABE-0006043pdeDCDSforward18984271900025Upstream
ABE-0006045yoaECDScomplement19000291901585Upstream
ABE-0285773yoaLCDScomplement19015731901731Upstream
ABE-0006054manXCDSforward19020481903019Matches
ABE-0006056manYCDSforward19030821903882Downstream
ABE-0006058manZCDSforward19038951904746Downstream
ABE-0006062yobDCDSforward19048011905259Downstream
ABE-0006065mntPCDSforward19056881906254Downstream
ABE-0006067rlmACDScomplement19062511907060Downstream
ABE-0006070cspCCDScomplement19072261907435Downstream
ABE-0006072yobFCDScomplement19074481907591Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.