Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006056 (manY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006056 showshow history
Names
manY JW1807 ptsX ECK1816 ptsP ptsM pel b1818
Product
PTS system mannose-specific IIC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1903082 1903882 801 267
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000666
EnteroFam0006056: Trusted threshold=722.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004700 (IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit) Apr 2008
Automated Process Approved PF03609 (PF03609 PTS system sorbose-specific iic component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name manY Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ptsM Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ptsP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1816 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ptsX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym pel Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1807 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1818 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system mannose-specific IIC component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name PTS enzyme IIC, mannose-specific Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name PTS family enzyme IIC, mannose-specific Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006056: Trusted threshold=722.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000666
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit Protein Sequence Similarity - InterPro Domain: IPR004700
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03609 PTS system sorbose-specific iic component Protein Sequence Similarity - PFAM Model Name: PF03609
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.7.1.69 Protein Sequence Similarity - InterPro Domain: IPR004700
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 4.4.A.6 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Mannose-Fructose-Sorbose (Man) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.116 (transport; substrate; mannose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10568 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946332 Published Annotation - Entrez Gene Database ID: 946332
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0006056 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69801 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788121 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69801 Published Annotation - Swiss-Prot Accession Number: P69801 Jan 2006
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS enzyme IIC, mannose-specific; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74888.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000666 manY CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001145 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001957 manY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001760 manY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001305 manY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001884 manY CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001200 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002149 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002475 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001535 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002601 manY_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003249 manY_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006747 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020173 manY CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002104 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003193 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004386 manY CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001773 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010403 manY CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001716 manY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002573 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007500 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009286 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078343 manY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002037 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002357 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010027 manY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010333 manY CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002063 manY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006483 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006173 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010233 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008793 manY CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007387 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007511 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010720 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010021 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010214 manY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008539 manY CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026612 manY CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006641 manY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006583 manY CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002238 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001712 manY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001865 manY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002242 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002186 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002080 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002030 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176242 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002023 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001369 manY CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132512 manY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004037 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002022 manY CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002155 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003036 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002341 manY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000436 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006773 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001526 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001407 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001493 manY CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002581 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002212 manY CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002000 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009987 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001651 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286907 manY CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005355 manY CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062651 manY CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001467 manY CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000627 manY CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003249 manY CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006783 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143038 manY CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005477 manY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001152 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002138 manY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005757 manY CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003944 manY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003909 manY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004620 manY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006393 manY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005332 manY CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008510 manY CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008516 manY CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005470 manY CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006335 manY CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004448 manY CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001045 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001042 manY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001393 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006585 manY CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008534 manY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006058 manY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007132 manY CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108935 manY CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082761 manY CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002215 manY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095953 manY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007495 manY CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006899 manY CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007901 manY CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002953 CDS
Person Approved Go view Shigella boydii 227 ADV-0001355 manY CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007493 manY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007854 manY CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072598 manY CDS
Person Approved Go view Shigella flexneri 301 ABT-0087737 manY CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001501 manY CDS
Person Approved Go view Shigella sonnei 046 ADD-0001458 manY CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003446 manY CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000620 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005271 manY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003874 manY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000110 manY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002128 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238180 manY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005766 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001370 manY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004222 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001658 manY CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121147 manY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007194 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008342 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008024 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007104 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032279 manY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006251 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002844 manY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001634 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008451 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006349 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001707 manY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002083 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002921 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012482 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004108 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1898082 to 1908882
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006039sdaACDSforward18969321898296Upstream
ABE-0006043pdeDCDSforward18984271900025Upstream
ABE-0006045yoaECDScomplement19000291901585Upstream
ABE-0285773yoaLCDScomplement19015731901731Upstream
ABE-0006054manXCDSforward19020481903019Upstream
ABE-0006056manYCDSforward19030821903882Matches
ABE-0006058manZCDSforward19038951904746Downstream
ABE-0006062yobDCDSforward19048011905259Downstream
ABE-0006065mntPCDSforward19056881906254Downstream
ABE-0006067rlmACDScomplement19062511907060Downstream
ABE-0006070cspCCDScomplement19072261907435Downstream
ABE-0006072yobFCDScomplement19074481907591Downstream
ABE-0006075yebOCDScomplement19082611908548Downstream
ABE-0006078mgrBCDScomplement19086231908766Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.