Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006058 (manZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006058 showshow history
Names
manZ ECK1817 JW1808 ptsX ptsM mpt gptB b1819
Product
PTS system mannose-specific IID component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1903895 1904746 852 284

go history

Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000667
EnteroFam0006058: Trusted threshold=802.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004704 (IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component) Apr 2008
Automated Process Approved PF03613 (PF03613 PTS system mannose/fructose/sorbose family IID component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004704
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004704
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name manZ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym mpt Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ptsM Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ptsX Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1808 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gptB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1817 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1819 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system mannose-specific IID component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name PTS enzyme IID, mannose-specific Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name PTS family enzyme IID, mannose-specific Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006058: Trusted threshold=802.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000667
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component Protein Sequence Similarity - InterPro Domain: IPR004704
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03613 PTS system mannose/fructose/sorbose family IID component Protein Sequence Similarity - PFAM Model Name: PF03613
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.7.1.69 Protein Sequence Similarity - InterPro Domain: IPR004704
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 4.4.A.6 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Mannose-Fructose-Sorbose (Man) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.116 (transport; substrate; mannose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69805 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946342 Published Annotation - Entrez Gene Database ID: 946342
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10569 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:345297175 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006058 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69805 Published Annotation - Swiss-Prot Accession Number: P69805 Jan 2006
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS enzyme IID, mannose-specific; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74889.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004704
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004704
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000667 manZ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001146 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002033 manZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001797 manZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001306 manZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001796 manZ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001199 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002150 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002476 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001534 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002602 manZ_5 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003250 manZ_4 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006746 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047122 manZ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002105 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003194 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004387 manZ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001774 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010404 manZ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001717 manZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002572 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007499 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078345 manZ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002038 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002358 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010028 manZ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010332 manZ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002064 manZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006484 manZ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006171 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010234 manZ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008794 manZ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007388 manZ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010215 manZ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008540 manZ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026613 manZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006640 manZ_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006584 manZ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002239 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001713 manZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001866 manZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002241 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002187 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002079 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002032 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176243 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002024 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001368 manZ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132513 manZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004035 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002024 manZ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002156 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003037 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002342 manZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000437 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006774 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001527 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001406 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001494 manZ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002580 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002213 manZ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001999 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009988 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001650 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286908 manZ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005356 manZ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062652 manZ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001475 manZ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000628 manZ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003250 manZ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006782 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143041 manZ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005476 manZ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001151 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002139 manZ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005756 manZ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003940 manZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003906 manZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004619 manZ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006394 manZ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005333 manZ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008509 manZ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008515 manZ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005471 manZ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006336 manZ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004447 manZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001044 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001041 manZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001392 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006586 manZ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008533 manZ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006059 manZ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007133 manZ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108936 manZ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082760 manZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002216 manZ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095956 manZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007494 manZ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006900 manZ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007902 manZ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002952 CDS
Person Approved Go view Shigella boydii 227 ADV-0001356 manZ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007494 manZ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007853 manZ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002268 manZ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072597 manZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0087736 manZ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001500 manZ CDS
Person Approved Go view Shigella sonnei 046 ADD-0001457 manZ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003447 manZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000619 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005267 gptB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003875 manZ_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000109 manZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002127 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238188 manZ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001369 manZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004221 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001659 manZ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121144 manZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007193 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008343 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008023 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007105 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032280 manZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006252 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002845 manZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001635 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008450 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006350 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001706 manZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002082 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002922 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012480 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004109 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20462mutantTn5 InsertionRequest the StrainABE-0006058manZmanZ::Tn5KAN-2 at position 173 in Plus orientation ,- pKD460Blattner Laboratory
FB20463mutantTn5 InsertionRequest the StrainABE-0006058manZmanZ::Tn5KAN-2 at position 173 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1898895 to 1909746
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006043pdeDCDSforward18984271900025Upstream
ABE-0006045yoaECDScomplement19000291901585Upstream
ABE-0285773yoaLCDScomplement19015731901731Upstream
ABE-0006054manXCDSforward19020481903019Upstream
ABE-0006056manYCDSforward19030821903882Upstream
ABE-0006058manZCDSforward19038951904746Matches
ABE-0006062yobDCDSforward19048011905259Downstream
ABE-0006065mntPCDSforward19056881906254Downstream
ABE-0006067rlmACDScomplement19062511907060Downstream
ABE-0006070cspCCDScomplement19072261907435Downstream
ABE-0006072yobFCDScomplement19074481907591Downstream
ABE-0006075yebOCDScomplement19082611908548Downstream
ABE-0006078mgrBCDScomplement19086231908766Downstream
ABE-0285057yobHCDSforward19089251909164Downstream
ABE-0006081kdgRCDScomplement19093081910099Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.