Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006162 (purT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006162 showshow history
Names
purT JW1838 ECK1850 b1849
Product
phosphoribosylglycinamide formyltransferase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1930881 1932059 1179 393
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000683
EnteroFam0006162: Trusted threshold=1044.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013817 (IPR013817 (DEPRECATED) Pre-ATP-grasp fold) Apr 2008
Automated Process Approved IPR013815 (IPR013815 ATP-grasp fold, subdomain 1) Apr 2008
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Apr 2008
Automated Process Approved IPR003135 (IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type) Apr 2008
Automated Process Approved IPR011761 (IPR011761 ATP-grasp fold) Apr 2008
Automated Process Approved IPR005862 (IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase) Apr 2008
Automated Process Approved IPR011054 (IPR011054 Rudiment single hybrid motif) Jul 2018
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2018
Automated Process Approved PF02222 (PF02222 ATP-grasp domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004644 phosphoribosylglycinamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purT Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1838 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1850 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1849 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylglycinamide formyltransferase 2 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoribosylglycinamide formyltransferase 2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006162: Trusted threshold=1044.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000683
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013817 (DEPRECATED) Pre-ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR013817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013815 ATP-grasp fold, subdomain 1 Protein Sequence Similarity - InterPro Domain: IPR013815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011054 Rudiment single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011054
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02222 ATP-grasp domain Protein Sequence Similarity - PFAM Model Name: PF02222
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase Protein Sequence Similarity - InterPro Domain: IPR005862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011761 ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR011761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Protein Sequence Similarity - InterPro Domain: IPR003135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.1.2.- Published Annotation - Swiss-Prot Accession Number: P33221 Feb 2006
Automated Process Uncurated EC number 2.1.2.2 Published Annotation - Database Name: EC2GO: GO:0004644
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33221 Published Annotation - Swiss-Prot Accession Number: P33221 Jan 2005
Automated Process Approved db xref GeneID:946368 Published Annotation - Entrez Gene Database ID: 946368
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11809 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006162 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788155 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74919.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004644 phosphoribosylglycinamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000683 purT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001595 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001213 purT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001512 purT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001903 purT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001693 purT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001121 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000440 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002512 purT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001500 purT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002635 purT CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003324 purT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007059 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019958 purT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001887 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003230 purT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302337 purT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002226 purT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001558 purT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004430 purT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008361 purT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001805 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005268 purT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001740 purT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002540 purT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007459 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009440 purT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008907 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081885 purT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002069 purT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002391 purT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008433 purT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010014 purT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002098 purT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006516 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004094 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010269 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009665 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010220 purT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007424 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010318 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010684 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010477 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010251 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007937 purT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010079 purT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008578 purT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026644 purT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008154 purT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006618 purT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002272 purT CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001743 purT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001899 purT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002140 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002220 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002046 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0002065 pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176279 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0002055 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001337 purT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132543 purT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004002 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002059 purT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002147 purT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003021 purT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002371 purT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000597 purT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006899 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001579 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003446 purT CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001531 purT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002535 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002257 purT CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001957 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010034 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001600 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285633 purT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005415 purT CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062741 purT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001285 purT CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001834 purT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004333 purT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006674 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001498 purT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005419 purT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001104 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002217 purT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005639 purT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003721 purT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003634 purT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004544 purT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006459 purT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005399 purT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008258 purT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007988 purT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005576 purT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006406 purT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004371 purT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000985 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000986 purT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001295 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006645 purT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007648 purT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006120 purT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007715 purT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109135 purT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082708 purT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002290 purT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096095 purT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007425 purT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007003 purT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007965 purT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002964 purT CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267255 purT CDS
Person Approved Go view Shigella boydii 227 ADV-0001270 purT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007536 purT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006649 purT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001284 purT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073027 purT CDS
Person Approved Go view Shigella flexneri 301 ABT-0088146 purT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001985 purT CDS
Person Approved Go view Shigella sonnei 046 ADD-0001406 purT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001300 VC1228 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000458 purT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000627 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005294 purT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003867 purT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000117 purT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002135 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238142 purT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005748 purT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001389 purT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004241 purT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001642 purT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121204 purT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007212 purT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008324 purT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004087 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008042 purT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007086 purT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032259 purT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006233 purT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002825 purT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001615 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008469 purT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006331 purT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001725 purT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002102 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002903 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015171 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003404 purT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20469mutantTn5 InsertionRequest the StrainABE-0006162purTpurT::Tn5KAN-2 at position 747 in Plus orientation ,+ pKD460Blattner Laboratory
FB20470mutantTn5 InsertionRequest the StrainABE-0006162purTpurT::Tn5KAN-2 at position 747 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1925881 to 1937059
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006129yobBCDSforward19254401926096Upstream
ABE-0006131exoXCDSforward19261201926782Upstream
ABE-0006133ptrBCDScomplement19267791928839Upstream
ABE-0006137yebECDScomplement19290481929707Upstream
ABE-0285470repeat_regionforward19299231930006Upstream
ABE-0006141yebFCDScomplement19300341930390Upstream
ABE-0006145yebGCDScomplement19304571930747Upstream
ABE-0006162purTCDSforward19308811932059Matches
ABE-0285471repeat_regionforward19320861932104Downstream
ABE-0006164edaCDScomplement19321151932756Downstream
ABE-0006166eddCDScomplement19327931934604Downstream
ABE-0006171zwfCDScomplement19348391936314Downstream
ABE-0006179yebKCDSforward19366521937521Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.