Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006164 (eda) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006164 showshow history
Names
eda JW1839 kdgA ECK1851 kga hga b1850
Product
2-dehydro-3-deoxyphosphogluconate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1932115 1932756 642 214
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000684
EnteroFam0006164: Trusted threshold=595.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR000887 (IPR000887 KDPG/KHG aldolase) Apr 2008
Automated Process Approved PF01081 (PF01081 KDPG and KHG aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009436 glyoxylate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009255 Entner-Doudoroff pathway through 6-phosphogluconate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name eda Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1839 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym hga Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym kga Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1851 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym kdgA Experimental - PubMed ID: 8145647
Reference: Erwinia chrysanthemi 3937 		Sep 2007
Person Approved locus tag b1850 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product 2-dehydro-3-deoxyphosphogluconate aldolase Experimental - PubMed ID: 8145647
Reference: Erwinia chrysanthemi 3937 		Sep 2007
Person Uncurated alternate product name multifunctional: 2-keto-3-deoxygluconate 6-phosphate aldolase; 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006164: Trusted threshold=595.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000684
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01081 KDPG and KHG aldolase Protein Sequence Similarity - PFAM Model Name: PF01081
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000887 KDPG/KHG aldolase Protein Sequence Similarity - InterPro Domain: IPR000887
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.1.3.16 Published Annotation - Swiss-Prot Accession Number: P0A955 Feb 2006
Person Approved EC number 4.1.2.14 Published Annotation - Swiss-Prot Accession Number: P0A955 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.9 (metabolism; energy metabolism, carbon; Entner-Doudoroff pathway) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.21 (metabolism; central intermediary metabolism; glyoxylate degradation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A955 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A955 Published Annotation - Swiss-Prot Accession Number: P0A955 Jan 2006
Automated Process Approved db xref ASAP:ABE-0006164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788156 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10256 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946367 Published Annotation - Entrez Gene Database ID: 946367
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Central intermediary metabolism: Entner-Douderoff Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009255 - Entner-Doudoroff pathway; GO_process: GO:0009436 - glyoxylate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74920.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009255 Entner-Doudoroff pathway through 6-phosphogluconate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009436 glyoxylate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000684 eda CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001594 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001021 eda CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000450 eda CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002251 eda CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000988 eda CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001120 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000439 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002513 eda CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001499 eda CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002636 eda CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003325 eda CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007060 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019960 eda CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001886 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003231 eda CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001296 eda CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004431 eda CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008360 eda CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001806 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005269 eda CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001741 eda CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002539 eda CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007458 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009439 eda CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008906 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078382 eda CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002070 eda CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002392 eda CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008432 eda CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010015 eda CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002099 eda CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006517 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004095 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005978 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010270 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009666 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010221 eda CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007425 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010319 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010683 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010476 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010252 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007936 eda CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010078 eda CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008579 eda CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026645 eda CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008153 eda CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006619 eda CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002273 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001744 eda CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001900 eda CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002139 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002221 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002045 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002066 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176280 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002056 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001336 eda CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132544 eda CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004001 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002060 eda CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001809 eda CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002645 eda CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002372 eda CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000598 eda CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006906 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001580 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003445 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001532 eda CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002534 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002258 eda CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001956 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010035 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001599 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285634 eda CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005416 eda CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062742 eda CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001274 eda CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000650 eda CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004334 eda CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006673 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137188 eda CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001331 eda-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005418 eda CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001103 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002218 eda CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005638 eda CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003717 eda CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003630 eda CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004543 eda CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006460 eda CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005400 eda CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008259 eda CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007989 eda CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005577 eda CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006407 eda CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004370 eda CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000984 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000985 eda CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001294 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006646 eda CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007647 eda CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006121 eda CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007716 eda CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109137 eda CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082707 eda CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002291 eda CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096097 eda CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007424 eda CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007004 eda CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007966 eda CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003007 eda CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266073 eda CDS
Person Approved Go view Shigella boydii 227 ADV-0001271 eda CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007537 eda CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006648 eda CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001285 eda CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073028 eda CDS
Person Approved Go view Shigella flexneri 301 ABT-0088147 eda CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001986 eda CDS
Person Approved Go view Shigella sonnei 046 ADD-0001405 eda CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000301 VC0285 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007078 eda CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000603 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006863 eda CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002657 eda CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003983 eda CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001525 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238876 eda CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006524 eda CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001761 eda CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004559 eda CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001374 eda CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122132 eda CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005495 eda CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008756 eda CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008155 eda CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005800 eda CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031957 eda CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005912 eda CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001869 eda CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001252 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007682 eda CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005992 eda CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002132 eda CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002509 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002521 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015175 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003403 eda CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20471mutantTn5 InsertionRequest the StrainABE-0006164edaeda::Tn5KAN-2 at position 308 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1927115 to 1937756
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006133ptrBCDScomplement19267791928839Downstream
ABE-0006137yebECDScomplement19290481929707Downstream
ABE-0285470repeat_regionforward19299231930006Downstream
ABE-0006141yebFCDScomplement19300341930390Downstream
ABE-0006145yebGCDScomplement19304571930747Downstream
ABE-0006162purTCDSforward19308811932059Downstream
ABE-0285471repeat_regionforward19320861932104Downstream
ABE-0006164edaCDScomplement19321151932756Matches
ABE-0006166eddCDScomplement19327931934604Upstream
ABE-0006171zwfCDScomplement19348391936314Upstream
ABE-0006179yebKCDSforward19366521937521Upstream
ABE-0006182pykACDSforward19376491939091Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.