Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006171 (zwf) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006171 showshow history
Names
zwf JW1841 ECK1853 b1852
Product
glucose-6-phosphate 1-dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1934839 1936314 1476 492
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000685
EnteroFam0006171: Trusted threshold=1460.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001282 (IPR001282 Glucose-6-phosphate dehydrogenase) Apr 2008
Automated Process Approved IPR022675 (IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal) Jul 2018
Automated Process Approved IPR022674 (IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02781 (PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain) Jul 2018
Automated Process Approved PF00479 (PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022675, IPR022674, IPR001282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009051 pentose-phosphate shunt, oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022675, IPR022674
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004345 glucose-6-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name zwf Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1853 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1841 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1852 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product glucose-6-phosphate 1-dehydrogenase Experimental - PubMed ID: 8145647
Reference: Erwinia chrysanthemi 		Sep 2007
Person Approved alternate product name glucose-6-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006171: Trusted threshold=1460.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000685
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001282 Glucose-6-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR001282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF00479
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02781
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding Protein Sequence Similarity - InterPro Domain: IPR022674
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR022675
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.49 Published Annotation - Swiss-Prot Accession Number: P0AC53 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.2 (metabolism; energy metabolism, carbon; pentose phosphate shunt, oxidative branch) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC53 Published Annotation - Swiss-Prot Accession Number: P0AC53 Jan 2006
Automated Process Approved db xref EcoGene:EG11221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788158 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC53 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006171 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946370 Published Annotation - Entrez Gene Database ID: 946370
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Oxidative branch, pentose pathway Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74922.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009051 pentose-phosphate shunt, oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022675, IPR022674, IPR001282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022675, IPR022674
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004345 glucose-6-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000685 zwf CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001593 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000279 zwf CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000214 zwf CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001070 zwf CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000268 zwf CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001119 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000438 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129590 zwf CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105024 zwf CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104432 zwf CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002515 zwf CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001497 zwf CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002638 zwf CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003327 zwf CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007061 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019961 zwf CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001885 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302339 zwf CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002228 zwf CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001557 zwf CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004433 zwf CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008358 zwf CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001808 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005271 zwf CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001743 zwf CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002537 zwf CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007456 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009437 zwf CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008904 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078384 zwf CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002072 zwf CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002394 zwf CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008430 zwf CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010017 zwf CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002101 zwf CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006519 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004097 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005980 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010272 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009668 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010223 zwf CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007427 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010321 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010681 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010474 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010254 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010076 zwf CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008581 zwf CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026647 zwf CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008151 zwf CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006621 zwf CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002275 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001746 zwf CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001902 zwf CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002137 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002223 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002043 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002068 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002058 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001334 zwf CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132546 zwf CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003999 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002062 zwf CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001811 zwf CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002641 zwf CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002374 zwf CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000600 zwf CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006907 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001581 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003444 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001533 zwf CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002533 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002259 zwf CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001955 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010041 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001598 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285635 zwf CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005417 zwf CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062743 zwf CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001273 zwf CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000651 zwf CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004335 zwf CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006672 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141667 zwf CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001329 zwf-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005416 zwf CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001100 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002220 zwf CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005635 zwf CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003708 zwf CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003622 zwf CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004541 zwf CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006462 zwf CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005402 zwf CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008261 zwf CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007991 zwf CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005579 zwf CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006409 zwf CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004368 zwf CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000982 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000983 zwf CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001291 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006648 zwf CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007645 zwf CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006123 zwf CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007718 zwf CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109145 zwf CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082705 zwf CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002294 zwf CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096107 zwf CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007422 zwf CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007007 zwf CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007968 zwf CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003006 zwf CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266076 zwf CDS
Person Approved Go view Shigella boydii 227 ADV-0001273 zwf CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007539 zwf CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006646 zwf CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001287 zwf CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073030 zwf CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001988 zwf CDS
Person Approved Go view Shigella sonnei 046 ADD-0001403 zwf CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003789 VCA0896 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003894 zwf CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000604 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006867 zwf CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002656 zwf CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000228 zwf CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001526 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238875 zwf CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006525 zwf CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001760 zwf CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004557 zwf CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001375 zwf CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122128 zwf CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005494 zwf CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008757 zwf CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001376 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008156 zwf CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005802 zwf CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031958 zwf CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005914 zwf CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001868 zwf CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001253 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007683 zwf CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005993 zwf CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002131 zwf CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002507 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002523 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015184 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003401 zwf CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1929839 to 1941314
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285470repeat_regionforward19299231930006Downstream
ABE-0006141yebFCDScomplement19300341930390Downstream
ABE-0006145yebGCDScomplement19304571930747Downstream
ABE-0006162purTCDSforward19308811932059Downstream
ABE-0285471repeat_regionforward19320861932104Downstream
ABE-0006164edaCDScomplement19321151932756Downstream
ABE-0006166eddCDScomplement19327931934604Downstream
ABE-0006171zwfCDScomplement19348391936314Matches
ABE-0006179yebKCDSforward19366521937521Upstream
ABE-0006182pykACDSforward19376491939091Upstream
ABE-0285472repeat_regionforward19390991939128Upstream
ABE-0006185lpxMCDScomplement19392221940193Upstream
ABE-0006189mepMCDScomplement19403131941635Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.