Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006182 (pykA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006182 showshow history
Names
pykA JW1843 ECK1855 b1854
Product
pyruvate kinase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1937649 1939091 1443 481
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000687
EnteroFam0006182: Trusted threshold=1387.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015793 (IPR015793 Pyruvate kinase, barrel) Apr 2008
Automated Process Approved IPR015794 (IPR015794 (DEPRECATED) Pyruvate kinase, alpha/beta) Apr 2008
Automated Process Approved IPR015795 (IPR015795 Pyruvate kinase, C-terminal) Apr 2008
Automated Process Approved IPR011037 (IPR011037 Pyruvate kinase-like, insert domain superfamily) Apr 2008
Automated Process Approved IPR001697 (IPR001697 Pyruvate kinase) Apr 2008
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2018
Automated Process Approved IPR036918 (IPR036918 Pyruvate kinase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00224 (PF00224 Pyruvate kinase, barrel domain) Jul 2018
Automated Process Approved PF02887 (PF02887 Pyruvate kinase, alpha/beta domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030955 potassium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004743 pyruvate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pykA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1843 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1855 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1854 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pyruvate kinase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name pyruvate kinase II, glucose stimulated Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name pyruvate kinase II, glucose-stimulated Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006182: Trusted threshold=1387.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000687
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02887 Pyruvate kinase, alpha/beta domain Protein Sequence Similarity - PFAM Model Name: PF02887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036918 Pyruvate kinase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015793 Pyruvate kinase, barrel Protein Sequence Similarity - InterPro Domain: IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001697 Pyruvate kinase Protein Sequence Similarity - InterPro Domain: IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015795 Pyruvate kinase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011037 Pyruvate kinase-like, insert domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011037
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015794 (DEPRECATED) Pyruvate kinase, alpha/beta Protein Sequence Similarity - InterPro Domain: IPR015794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00224 Pyruvate kinase, barrel domain Protein Sequence Similarity - PFAM Model Name: PF00224
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.40 Published Annotation - Swiss-Prot Accession Number: P21599 Feb 2006
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21599 Published Annotation - Swiss-Prot Accession Number: P21599 Jan 2005
Automated Process Approved db xref GI:1788160 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946527 Published Annotation - Entrez Gene Database ID: 946527
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21599 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006182 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10803 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of tig ASAP:1511:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note pyruvate kinase II, glucose stimulated; GO_process: GO:0006096 - glycolysis; GO_process: GO:0006113 - fermentation; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74924.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030955 potassium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004743 pyruvate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000687 pykA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000106 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000176 pykA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000338 pykA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001934 pykA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000255 pykA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001117 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000436 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129589 pykA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105023 pykA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104431 pykA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002517 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001495 pykA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003329 pykA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007063 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019963 pykA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001883 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003236 pykA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302343 pykA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002229 pykA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001556 pykA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004436 pykA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008355 pykA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001810 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005273 pyk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001745 pykA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002534 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007454 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009434 pykA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008901 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078387 pykA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002075 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008428 pykA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010020 pykA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002103 pykA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006521 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005983 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010275 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009671 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010226 pykA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007430 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010324 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010678 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010257 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007930 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010073 pykA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008584 pykA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026649 pykA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008148 pykA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006624 pykA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002278 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001748 pykA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001904 pykA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002225 pyk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002041 pyk CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002071 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176286 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002061 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001331 pykA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132548 pykA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003996 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002065 pykA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001813 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002639 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002376 pykA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000603 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006909 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001583 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003442 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001535 pykA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002531 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002261 pykA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001953 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010043 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001594 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285637 pykA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005419 pykA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062745 pykA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001287 pykA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001836 pykA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006670 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141656 pykA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004411 pyk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005414 pykA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001098 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002223 pykA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005633 pykA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003701 pykA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003615 pykA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004539 pykA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006464 pykA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005404 pykA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008263 pykA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005581 pykA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006411 pykA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004366 pykA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000980 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000981 pykA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001287 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006650 pykA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007643 pykA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006125 pykA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007720 pykA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109153 pykA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082703 pykA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002298 pykA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096115 pykA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007418 pykA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007009 pykA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007970 pykA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003004 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266078 pykA CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001275 pykA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007542 pykA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006643 pykA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001290 pykA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073032 pykA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088150 pykA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001990 pykA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001401 pykA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002083 VC2008 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000292 pykA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003889 pykA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000606 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006876 pykA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002653 pykA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000230 pykA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001528 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238873 pykA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006527 pykA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001758 pykA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004555 pykA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001377 pykA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122119 pykA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005492 pykA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008759 pykA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001374 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008158 pykA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005804 pykA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031960 pykA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005916 pykA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001866 pykA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001255 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007685 pykA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005995 pykA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002129 pykA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002505 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002525 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015194 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003398 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20473mutantTn5 InsertionRequest the StrainABE-0006182pykApykA::Tn5KAN-2 at position 1240 in Plus orientation ,+ pKD460Blattner Laboratory
FB20474mutantTn5 InsertionRequest the StrainABE-0006182pykApykA::Tn5KAN-2 at position 1240 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1932649 to 1944091
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006164edaCDScomplement19321151932756Upstream
ABE-0006166eddCDScomplement19327931934604Upstream
ABE-0006171zwfCDScomplement19348391936314Upstream
ABE-0006179yebKCDSforward19366521937521Upstream
ABE-0006182pykACDSforward19376491939091Matches
ABE-0285472repeat_regionforward19390991939128Downstream
ABE-0006185lpxMCDScomplement19392221940193Downstream
ABE-0006189mepMCDScomplement19403131941635Downstream
ABE-0006191znuACDScomplement19416511942583Downstream
ABE-0006198znuCCDSforward19426621943417Downstream
ABE-0006201znuBCDSforward19434141944199Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.