Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006185 (lpxM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006185 showshow history
Names
lpxM waaN mlt msbB JW1844 ECK1856 b1855
Product
acyl (myristate) transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1939222 1940193 972 324
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000688
EnteroFam0006185: Trusted threshold=817.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004960 (IPR004960 Bacterial lipid A biosynthesis acyltransferase) Apr 2008
Automated Process Approved IPR011921 (IPR011921 Lipid A biosynthesis myristoyltransferase) Apr 2008
Automated Process Approved PF03279 (PF03279 Bacterial lipid A biosynthesis acyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004960
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxM Published Annotation - PubMed ID: 10092655
Reference: Escherichia coli K-12 W3110 		Jun 2006
Automated Process Approved synonym mlt Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym waaN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1856 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1844 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym msbB Published Sequence Analysis - PubMed ID: 1732206
Reference: Escherichia coli K-12 W3110 		Jun 2006
Person Approved locus tag b1855 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product acyl (myristate) transferase Experimental - PubMed ID: 11994481 Sep 2007
Person Approved alternate product name suppressor of htrB, heat shock protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name myristoyl transferase in lipid A biosynthesis, suppressor of htrB (lpxL) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name myristoyl-acyl carrier protein (ACP)-dependent acyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006185: Trusted threshold=817.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000688
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF03279 Bacterial lipid A biosynthesis acyltransferase Protein Sequence Similarity - PFAM Model Name: PF03279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011921 Lipid A biosynthesis myristoyltransferase Protein Sequence Similarity - InterPro Domain: IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004960 Bacterial lipid A biosynthesis acyltransferase Protein Sequence Similarity - InterPro Domain: IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.-.-.- Published Annotation - Database Name: EC2GO: GO:0016740
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.3.1.- Published Annotation - Swiss-Prot Accession Number: P24205 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10614 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788161 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006185 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945143 Published Annotation - Entrez Gene Database ID: 945143
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24205 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24205 Published Annotation - Swiss-Prot Accession Number: P24205 Jan 2005
Person Approved function putative factor; Adaptations, atypical conditions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note suppressor of htrB, heat shock protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74925.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004960
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000688 lpxM CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001591 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001168 lpxM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001084 lpxM CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001433 lpxM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000874 lpxM CDS
Paralog
Person Uncurated Go view Shigella flexneri plasmid pWR100 ACT-0247419 msbB2 CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001116 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000435 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002518 msbB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001489 msbB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002642 msbB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003330 msbB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007068 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047089 lpxM CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001880 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003237 msbB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302351 msbB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002231 msbB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001554 msbB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004437 msbB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008354 msbB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001811 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005274 msbB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001746 msbB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002533 msbB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007453 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009433 msbB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008900 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078388 lpxM CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002076 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008427 msbB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010021 msbB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002104 lpxM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006522 msbB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004593 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005984 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010276 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009672 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010227 msbB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007431 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010325 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010677 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009771 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010258 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007929 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010072 msbB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008585 msbB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026650 lpxM CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008147 lpxM CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006625 msbB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002279 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001749 lpxM CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001905 lpxM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002120 msbB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002226 msbB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002040 msbB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002072 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176287 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002062 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001330 msbB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132549 lpxM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003995 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002066 msbB CDS
Automated Process Uncurated Go view Escherichia coli plasmid pCoo (ETEC) BAJ-0000112 msbB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001818 msbB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002638 msbB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002377 msbB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000604 msbB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006912 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001585 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003440 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001537 msbB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002529 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002263 msbB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001951 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010046 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001592 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285639 lpxM CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005422 msbB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062746 lpxM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004386 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002916 msbB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004338 lpxM CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006669 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141654 msbB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005413 msbB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001097 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002227 lpxM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005632 msbB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003698 msbB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003612 msbB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004538 msbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006465 msbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005405 msbB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008264 msbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005582 msbB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006412 msbB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004363 msbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000979 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000980 lpxM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001286 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006651 msbB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007642 msbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006126 msbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007721 msbB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109156 lpxM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082702 lpxM CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002299 msbB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096117 lpxM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007417 msbB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007012 msbB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003002 msbB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265668 CDS
Person Approved Go view Shigella boydii 227 ADV-0001288 lpxM CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006347 msbB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006642 msbB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001291 lpxM CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073034 lpxM CDS
Person Approved Go view Shigella flexneri 301 ABT-0088151 lpxM CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001991 msbB CDS
Automated Process Uncurated Go view Shigella flexneri plasmid pWR100 ACT-0247419 msbB2 CDS
Person Uncurated Go view Shigella flexneri plasmid pWR501 ACS-0247158 msbB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001391 lpxM CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000228 VC0212 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003881 lpxM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000607 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006880 msbB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002652 msbB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000231 lpxM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001529 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238871 lpxM CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006528 msbB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001757 lpxM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004554 msbB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001378 lpxM CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122117 lpxM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005491 msbB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008760 msbB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001373 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008159 msbB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005805 msbB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031961 lpxM CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005917 msbB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001865 lpxM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001256 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007686 msbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005996 msbB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002128 lpxM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002502 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002528 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015199 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003397 msbB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20475mutantTn5 InsertionRequest the StrainABE-0006185lpxMmsbB::Tn5KAN-2 at position 194 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1934222 to 1945193
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006166eddCDScomplement19327931934604Downstream
ABE-0006171zwfCDScomplement19348391936314Downstream
ABE-0006179yebKCDSforward19366521937521Downstream
ABE-0006182pykACDSforward19376491939091Downstream
ABE-0285472repeat_regionforward19390991939128Downstream
ABE-0006185lpxMCDScomplement19392221940193Matches
ABE-0006189mepMCDScomplement19403131941635Upstream
ABE-0006191znuACDScomplement19416511942583Upstream
ABE-0006198znuCCDSforward19426621943417Upstream
ABE-0006201znuBCDSforward19434141944199Upstream
ABE-0285473repeat_regionforward19442191944345Upstream
ABE-0006204ruvBCDScomplement19443461945356Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.