Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006198 (znuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006198 showshow history
Names
znuC JW1847 ECK1859 yebM b1858
Product
High-affinity zinc uptake system ATP-binding protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1942662 1943417 756 252
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000691
EnteroFam0006198: Trusted threshold=672.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name znuC Experimental - PubMed ID: 9680209
Reference: Escherichia coli 		Aug 2002
Person Approved synonym JW1847 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yebM Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1859 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1858 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product High-affinity zinc uptake system ATP-binding protein Experimental - PubMed ID: 9680209
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name zinc transporter subunit: ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name high-affinity Zn transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006198: Trusted threshold=672.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000691
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.191 (transport; substrate; Zn) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9X1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9X1 Published Annotation - Swiss-Prot Accession Number: P0A9X1 Jan 2006
Automated Process Approved db xref GI:1788165 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946374 Published Annotation - Entrez Gene Database ID: 946374
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13132 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74928.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000691 znuC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001588 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000434 znuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000550 znuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002182 znuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000388 znuC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001113 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000432 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129588 znuC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105021 znuC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104428 znuC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002521 znuC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001486 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002645 znuC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003333 znuC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007072 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017083 znuC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001877 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003240 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302363 znuC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002235 znuC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001551 znuC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004440 znuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008351 znuC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001814 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005277 znuC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001749 znuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002530 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007449 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009430 znuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008897 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078391 znuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002079 znuC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002419 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008424 znuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010024 znuC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002107 znuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006525 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004590 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005988 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010279 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009675 znuC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007434 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010328 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010674 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009775 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010261 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007926 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010069 znuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008588 znuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026653 znuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008144 znuC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006628 znuC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002282 znuC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001752 znuC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001908 znuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002117 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002229 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002037 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002075 znuC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176291 znuC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002065 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001327 znuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132552 znuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003992 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002069 znuC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001821 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002635 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002381 znuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000607 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006916 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001588 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003437 znuC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001540 znuC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002526 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002266 znuC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001948 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010049 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001589 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285642 znuC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005425 znuC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062749 znuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001288 znuC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000652 znuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003772 znuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006665 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141648 znuC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005344 znuC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005410 znuC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001094 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002230 znuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005629 znuC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003687 znuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003601 znuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004535 znuC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006468 znuC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005408 znuC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008267 znuC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008302 znuC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005585 znuC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006415 znuC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004360 znuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000976 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000977 znuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001283 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006654 znuC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007639 znuC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006129 znuC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007724 znuC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109162 znuC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082699 znuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002303 znuC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096124 znuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007414 znuC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007015 znuC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008263 znuC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002999 CDS
Person Approved Go view Shigella boydii 227 ADV-0001291 znuC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006350 znuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006639 znuC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001294 znuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073037 znuC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088154 znuC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001994 yebM CDS
Person Approved Go view Shigella sonnei 046 ADD-0001388 znuC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002158 VC2082 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000142 znuC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003873 znuC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000610 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006891 znuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002649 znuC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000234 znuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001532 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238866 znuC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006531 znuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001753 znuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004551 znuC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001381 znuC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122109 znuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005488 znuC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008763 znuC CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008162 znuC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005808 znuC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031964 znuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005920 znuC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001861 znuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001260 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007689 znuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005999 znuC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002125 znuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002498 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002532 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015211 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003394 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1937662 to 1948417
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006182pykACDSforward19376491939091Upstream
ABE-0285472repeat_regionforward19390991939128Upstream
ABE-0006185lpxMCDScomplement19392221940193Upstream
ABE-0006189mepMCDScomplement19403131941635Upstream
ABE-0006191znuACDScomplement19416511942583Upstream
ABE-0006198znuCCDSforward19426621943417Matches
ABE-0006201znuBCDSforward19434141944199Overlaps Downstream
ABE-0285473repeat_regionforward19442191944345Downstream
ABE-0006204ruvBCDScomplement19443461945356Downstream
ABE-0006206ruvACDScomplement19453651945976Downstream
ABE-0285220yobICDScomplement19461151946180Downstream
ABE-0006213yebBCDSforward19462511946853Downstream
ABE-0006215ruvCCDScomplement19468551947376Downstream
ABE-0006219yebCCDScomplement19474111948151Downstream
ABE-0006223nudBCDScomplement19481801948632Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.