Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006226 (aspS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006226 showshow history
Names
aspS JW1855 ECK1867 tls b1866
Product
aspartyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1948750 1950522 1773 591
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000698
EnteroFam0006226: Trusted threshold=1688.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004524 (IPR004524 Aspartate-tRNA ligase, type 1) Apr 2008
Automated Process Approved IPR002312 (IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb) Apr 2008
Automated Process Approved IPR004365 (IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type) Apr 2008
Automated Process Approved IPR004115 (IPR004115 GAD-like domain superfamily) Apr 2008
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Apr 2008
Automated Process Approved IPR004364 (IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)) Apr 2008
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Apr 2008
Automated Process Approved IPR029351 (IPR029351 GAD domain) Jul 2018
Automated Process Approved PF01336 (PF01336 OB-fold nucleic acid binding domain) Jul 2018
Automated Process Approved PF00152 (PF00152 tRNA synthetases class II (D, K and N)) Jul 2018
Automated Process Approved PF02938 (PF02938 GAD domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004364
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aspS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym tls Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1867 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1855 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1866 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aspartyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name aspartate tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006226: Trusted threshold=1688.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000698
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004524 Aspartate-tRNA ligase, type 1 Protein Sequence Similarity - InterPro Domain: IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Protein Sequence Similarity - InterPro Domain: IPR002312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01336 OB-fold nucleic acid binding domain Protein Sequence Similarity - PFAM Model Name: PF01336
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00152 tRNA synthetases class II (D, K and N) Protein Sequence Similarity - PFAM Model Name: PF00152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02938 GAD domain Protein Sequence Similarity - PFAM Model Name: PF02938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029351 GAD domain Protein Sequence Similarity - InterPro Domain: IPR029351
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Protein Sequence Similarity - InterPro Domain: IPR004365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004115 GAD-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR004115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Protein Sequence Similarity - InterPro Domain: IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.-.-.- Published Annotation - Database Name: EC2GO: GO:0016874
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.12 Published Annotation - Swiss-Prot Accession Number: P21889 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10097 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21889 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21889 Published Annotation - Swiss-Prot Accession Number: P21889 Jan 2005
Automated Process Approved db xref ASAP:ABE-0006226 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946385 Published Annotation - Entrez Gene Database ID: 946385
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aspartate tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74936.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004364
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000698 aspS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001581 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000224 aspS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000201 aspS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000263 aspS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000693 aspS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001106 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000425 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129586 aspS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105019 aspS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104426 aspS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002528 aspS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001479 aspS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002652 aspS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003340 aspS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007084 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017071 aspS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001870 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003248 aspS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302388 aspS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002243 aspS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001544 aspS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004449 aspS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008343 aspS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001822 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005285 aspS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001757 aspS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002522 aspS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007440 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009422 aspS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008450 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078399 aspS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002088 aspS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002427 aspS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008416 aspS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010032 aspS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002115 aspS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006533 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005998 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010287 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009684 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006080 aspS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007442 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009164 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010666 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009783 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010269 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007918 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009603 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009993 aspS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026662 aspS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008136 aspS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006636 aspS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002290 aspS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001760 aspS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001916 aspS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002108 aspS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002238 aspS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002028 aspS CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002083 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176299 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002073 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001319 aspS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132560 aspS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003984 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002077 aspS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001828 aspS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002628 aspS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002388 aspS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000615 aspS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006935 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001595 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003430 aspS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001548 aspS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002518 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002274 aspS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001941 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010056 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001582 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285650 aspS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005433 aspS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062760 aspS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001281 aspS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001843 aspS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003783 aspS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006652 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141630 aspS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004050 aspS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005400 aspS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001086 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002241 aspS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005619 aspS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003656 aspS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003570 aspS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004525 aspS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006477 aspS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005417 aspS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008277 aspS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008293 aspS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005594 aspS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006424 aspS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004348 aspS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000967 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000968 aspS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001272 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006665 aspS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007626 aspS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006138 aspS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007733 aspS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109187 aspS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082690 aspS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002314 aspS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096151 aspS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007404 aspS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007024 aspS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008276 aspS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002992 aspS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266020 aspS CDS
Person Approved Go view Shigella boydii 227 ADV-0001309 aspS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006503 aspS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006631 aspS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001302 aspS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073048 aspS CDS
Person Approved Go view Shigella flexneri 301 ABT-0088161 aspS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002002 aspS CDS
Person Approved Go view Shigella sonnei 046 ADD-0001380 aspS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001234 VC1166 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000145 aspS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003846 aspS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000319 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006916 aspS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002641 aspS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000242 aspS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001540 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238852 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006539 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001744 aspS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004544 aspS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001388 aspS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122081 aspS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005481 aspS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006586 aspS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001534 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008170 aspS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005816 aspS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031972 aspS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005927 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001853 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001268 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007698 aspS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006006 aspS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002118 aspS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002490 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002540 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015241 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003386 aspS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1943750 to 1955522
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006201znuBCDSforward19434141944199Downstream
ABE-0285473repeat_regionforward19442191944345Downstream
ABE-0006204ruvBCDScomplement19443461945356Downstream
ABE-0006206ruvACDScomplement19453651945976Downstream
ABE-0285220yobICDScomplement19461151946180Downstream
ABE-0006213yebBCDSforward19462511946853Downstream
ABE-0006215ruvCCDScomplement19468551947376Downstream
ABE-0006219yebCCDScomplement19474111948151Downstream
ABE-0006223nudBCDScomplement19481801948632Downstream
ABE-0006226aspSCDScomplement19487501950522Matches
ABE-0006231yecDCDSforward19508321951398Upstream
ABE-0006233yecECDSforward19513951952213Upstream
ABE-0006235yecNCDSforward19522661952661Upstream
ABE-0006237cmoACDSforward19527021953445Upstream
ABE-0006241cmoBCDSforward19534421954413Upstream
ABE-0285474repeat_regionforward19544291954526Upstream
ABE-0006244torZCDScomplement19545781957007Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.