Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006237 (cmoA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006237 showshow history
Names
cmoA yecO JW1859 ECK1871 b1870
Product
carboxy-S-adenosyl-L-methionine synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1952702 1953445 744 248
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000700
EnteroFam0006237: Trusted threshold=691.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005271 (IPR005271 Carboxy-S-adenosyl-L-methionine synthase) Apr 2008
Automated Process Approved IPR013216 (IPR013216 Methyltransferase type 11) Apr 2008
Automated Process Approved IPR029063 (IPR029063 S-adenosyl-L-methionine-dependent methyltransferase) Jul 2018
Automated Process Approved PF13649 (PF13649 Methyltransferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0002098 tRNA wobble uridine modification GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cmoA Experimental - PubMed ID: 15383682
Reference: Salmonella Typhimurium 		Sep 2007
Person Approved synonym JW1859 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1871 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yecO Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b1870 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product carboxy-S-adenosyl-L-methionine synthase Published Annotation - EcoCyc Accession Number: G7020
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Automated Process Approved alternate product name tRNA methyltransferase, S-adenosyl-L-methionine-dependent methyltransferase Experimental - PubMed ID: 15383682
Reference: Salmonella Typhimurium 		Sep 2007
Automated Process Approved alternate product name carboxy-SAM synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name predicted methyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative methyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006237: Trusted threshold=691.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000700
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Protein Sequence Similarity - InterPro Domain: IPR029063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13649 Methyltransferase domain Protein Sequence Similarity - PFAM Model Name: PF13649
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013216 Methyltransferase type 11 Protein Sequence Similarity - InterPro Domain: IPR013216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005271 Carboxy-S-adenosyl-L-methionine synthase Protein Sequence Similarity - InterPro Domain: IPR005271
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.1.1.- Protein Sequence Similarity - InterPro Domain: IPR013216
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76290 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788177 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76290 Published Annotation - Swiss-Prot Accession Number: P76290 Jan 2005
Automated Process Approved db xref ASAP:ABE-0006237 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946380 Published Annotation - Entrez Gene Database ID: 946380
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG14033 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; tRNA modification Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74940.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0002098 tRNA wobble uridine modification GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000700 cmoA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001578 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000815 cmoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000683 cmoA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000265 cmoA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000408 cmoA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001098 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000421 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002532 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001475 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002656 cmoA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003406 cmoA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007087 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017065 cmoA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001867 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003252 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302399 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002250 yecO CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001540 yecO CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004453 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008339 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001826 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009659 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001761 yecO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002517 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007436 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009033 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008446 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078403 cmoA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002093 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002431 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008411 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009328 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002119 cmoA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006538 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000124 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006002 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010291 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009688 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006084 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007446 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009160 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010662 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009787 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010273 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007914 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009599 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009997 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026666 cmoA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008132 cmoA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006641 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002308 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001764 yecO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001920 yecO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002104 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002284 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002024 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002141 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176303 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002137 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001315 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132564 cmoA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003980 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002081 yecO CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001832 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002621 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002392 yecO CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000619 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006944 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001598 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003426 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001551 yecO CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002515 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002278 yecO CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001938 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010058 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001578 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285653 cmoA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005437 yecO CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062774 cmoA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004393 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003920 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003788 cmoA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006648 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141619 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004285 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005396 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001082 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002245 cmoA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005615 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003648 yecO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003562 yecO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004521 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006481 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005421 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008281 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008289 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005598 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006428 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004344 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000963 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000964 cmoA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001267 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006669 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007622 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006142 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007737 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109198 cmoA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082686 cmoA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002319 yecO CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096164 cmoA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007400 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007028 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008280 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002987 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266022 CDS
Person Approved Go view Shigella boydii 227 ADV-0001240 yecO CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007574 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006849 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001325 yecO CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073108 cmoA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088198 cmoA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002044 yecO CDS
Person Approved Go view Shigella sonnei 046 ADD-0001348 cmoA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001232 VC1164 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003841 yecO CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000322 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006928 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002637 cmoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000246 cmoA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003577 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238846 cmoA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006542 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001741 cmoA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004541 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001391 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122071 cmoA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005478 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006589 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001537 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008173 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005819 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031975 cmoA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005930 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001850 cmoA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001271 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007701 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006009 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002115 cmoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002487 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002543 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015264 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003382 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1947702 to 1958445
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006219yebCCDScomplement19474111948151Upstream
ABE-0006223nudBCDScomplement19481801948632Upstream
ABE-0006226aspSCDScomplement19487501950522Upstream
ABE-0006231yecDCDSforward19508321951398Upstream
ABE-0006233yecECDSforward19513951952213Upstream
ABE-0006235yecNCDSforward19522661952661Upstream
ABE-0006237cmoACDSforward19527021953445Matches
ABE-0006241cmoBCDSforward19534421954413Overlaps Downstream
ABE-0285474repeat_regionforward19544291954526Downstream
ABE-0006244torZCDScomplement19545781957007Downstream
ABE-0006246torYCDScomplement19570321958132Downstream
ABE-0285775micLncRNAcomplement19584411958520Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.