Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006244 (torZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006244 showshow history
Names
torZ JW1861 ECK1873 bisZ b1872
Product
trimethylamine N-oxide reductase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1954578 1957007 2430 810
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006658 (IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase) Apr 2008
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved IPR011059 (IPR011059 Metal-dependent hydrolase, composite domain superfamily) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved IPR019546 (IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal) Jul 2018
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006656, IPR006657, IPR006658
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name torZ Experimental - PubMed ID: 11004177
Reference: Escherichia coli
Aug 2002
Person Approved synonym bisZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW1861 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1873 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1872 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product trimethylamine N-oxide reductase 2 Published Annotation - EcoCyc Accession Number: G7022
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name trimethylamine N-oxide reductase system III, catalytic subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name trimethylamine N-oxide reductase in TMAO system III with TorY Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name TMAO-reductase Experimental - PubMed ID: 11004177
Reference: Escherichia coli
Jan 2006
Protein Family
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Protein Sequence Similarity - InterPro Domain: IPR006658
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Protein Sequence Similarity - InterPro Domain: IPR019546
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011059 Metal-dependent hydrolase, composite domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011059
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 1.7.2.3 Published Annotation - Swiss-Prot Accession Number: P46923 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0006244 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:87081994 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P46923 Published Annotation - Swiss-Prot Accession Number: P46923 Jan 2005
Automated Process Approved db xref EcoGene:EG13276 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946389 Published Annotation - Entrez Gene Database ID: 946389
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P46923 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Central intermediary metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74942.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006656, IPR006657, IPR006658
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000061 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000020 torZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000023 torZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000028 torZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000008 torZ CDS
Ortholog
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304880 bisC CDS
Person Uncurated Go view Escherichia albertii TW07627 AFX-0004455 torZ CDS
Person Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008337 torZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002515 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007433 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008444 TorZ CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078405 torZ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002095 torZ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002434 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002121 torZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006541 torZ CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000127 CDS
Person Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006004 torZ CDS
Person Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010293 torZ CDS
Person Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009690 torZ CDS
Person Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006086 torZ CDS
Person Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007448 torZ CDS
Person Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009158 torZ CDS
Person Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010660 torZ CDS
Person Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009789 torZ CDS
Person Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010275 torZ CDS
Person Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007912 torZ CDS
Person Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009597 torZ CDS
Person Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009999 torZ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026668 torZ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008130 torZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006644 torZ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002310 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001766 torZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001922 torZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002102 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002286 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002143 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176305 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002139 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001313 torZ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132566 torZ CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003977 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002083 bisZ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061249 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001464 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005555 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001823 torZ CDS
Person Approved Go view Shigella boydii 227 ADV-0001238 torZ pseudogene
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007576 torZ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001327 bisZ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073112 bisZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088200 bisZ CDS
Person Approved Go view Shigella sonnei 046 ADD-0001346 torZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007369 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006861 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006574 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005054 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006437 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006461 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004507 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006112 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003782 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001199 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1949578 to 1962007
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006226aspSCDScomplement19487501950522Downstream
ABE-0006231yecDCDSforward19508321951398Downstream
ABE-0006233yecECDSforward19513951952213Downstream
ABE-0006235yecNCDSforward19522661952661Downstream
ABE-0006237cmoACDSforward19527021953445Downstream
ABE-0006241cmoBCDSforward19534421954413Downstream
ABE-0285474repeat_regionforward19544291954526Downstream
ABE-0006244torZCDScomplement19545781957007Matches
ABE-0006246torYCDScomplement19570321958132Upstream
ABE-0285775micLncRNAcomplement19584411958520Upstream
ABE-0006252cutCCDScomplement19585201959266Upstream
ABE-0006257yecMCDScomplement19592801959846Upstream
ABE-0006264argSCDSforward19600621961795Upstream
ABE-0285811yecVCDScomplement19618371961881Upstream
ABE-0006268yecTCDSforward19619721962460Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.