Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006246 (torY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006246 showshow history
Names
torY JW1862 ECK1874 yecK b1873
Product
cytochrome c quinol dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1957032 1958132 1101 367
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011031 (IPR011031 Multihaem cytochrome) Apr 2008
Automated Process Approved IPR005126 (IPR005126 NapC/NirT cytochrome c, N-terminal) Apr 2008
Automated Process Approved IPR009154 (IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK) Apr 2008
Automated Process Approved IPR036280 (IPR036280 Multiheme cytochrome superfamily) Jul 2018
Automated Process Approved PF03264 (PF03264 NapC/NirT cytochrome c family, N-terminal region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name torY Experimental - PubMed ID: 11004177
Reference: Escherichia coli 		Aug 2002
Person Approved synonym yecK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1874 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1862 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1873 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cytochrome c quinol dehydrogenase Published Annotation - EcoCyc Accession Number: G7023
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name pentahaem c-type cytochrome Experimental - PubMed ID: 11004177
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name TMAO reductase III (TorYZ), cytochrome c-type subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name cytochrome c-type protein in TMAO system III with TorZ Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR011031 Multihaem cytochrome Protein Sequence Similarity - InterPro Domain: IPR011031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK Protein Sequence Similarity - InterPro Domain: IPR009154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036280 Multiheme cytochrome superfamily Protein Sequence Similarity - InterPro Domain: IPR036280
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03264 NapC/NirT cytochrome c family, N-terminal region Protein Sequence Similarity - PFAM Model Name: PF03264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005126 NapC/NirT cytochrome c, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005126
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.4.3 (metabolism; energy production/transport; electron carrier) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P52005 Published Annotation - Swiss-Prot Accession Number: P52005 Jan 2005
Automated Process Approved db xref GeneID:946490 Published Annotation - Entrez Gene Database ID: 946490
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788181 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52005 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006246 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13277 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_function: GO:0009055 - electron carrier activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74943.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 8.02
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003538 torY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003524 torY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002519 torY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003280 torY CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004456 torY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008336 torY CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001830 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009655 torY CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001767 torY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002514 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007431 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009030 torY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008443 TorY CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078406 torY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002096 torY CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002435 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008408 torY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009331 torY CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002122 torY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006542 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000128 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006005 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010294 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009691 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006087 torY CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007449 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009157 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010659 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009790 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010276 torY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007911 torY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009596 torY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010000 torY CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026669 torY CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008129 torY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006645 torY CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002311 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001767 torY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001923 torY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002101 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002287 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002021 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002144 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176306 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002140 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001312 torY CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132567 torY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003976 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002084 yecK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007577 torY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006845 torY CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001328 yecK pseudogene
Person Approved Go view Shigella flexneri 2457T ABQ-0073113 yecK CDS
Person Approved Go view Shigella flexneri 301 ABT-0088201 yecK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002050 yecK CDS
Person Approved Go view Shigella sonnei 046 ADD-0001342 torY CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002026 VC1951 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001239 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003734 torC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1952032 to 1963132
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006233yecECDSforward19513951952213Downstream
ABE-0006235yecNCDSforward19522661952661Downstream
ABE-0006237cmoACDSforward19527021953445Downstream
ABE-0006241cmoBCDSforward19534421954413Downstream
ABE-0285474repeat_regionforward19544291954526Downstream
ABE-0006244torZCDScomplement19545781957007Downstream
ABE-0006246torYCDScomplement19570321958132Matches
ABE-0285775micLncRNAcomplement19584411958520Upstream
ABE-0006252cutCCDScomplement19585201959266Upstream
ABE-0006257yecMCDScomplement19592801959846Upstream
ABE-0006264argSCDSforward19600621961795Upstream
ABE-0285811yecVCDScomplement19618371961881Upstream
ABE-0006268yecTCDSforward19619721962460Upstream
ABE-0006270flhECDScomplement19625801962972Upstream
ABE-0006272flhACDScomplement19629721965050Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.