Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006264 (argS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006264 showshow history
Names
argS JW1865 ECK1877 lov b1876
Product
arginyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1960062 1961795 1734 578
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000703
EnteroFam0006264: Trusted threshold=1602.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001278 (IPR001278 Arginine-tRNA ligase) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR008909 (IPR008909 DALR anticodon binding) Apr 2008
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR005148 (IPR005148 Arginyl tRNA synthetase N-terminal domain) Apr 2008
Automated Process Approved IPR035684 (IPR035684 Arginyl-tRNA synthetase, catalytic core domain) Jul 2018
Automated Process Approved IPR036695 (IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily) Jul 2018
Automated Process Approved PF05746 (PF05746 DALR anticodon binding domain) Jul 2018
Automated Process Approved PF00750 (PF00750 tRNA synthetases class I (R)) Jul 2018
Automated Process Approved PF03485 (PF03485 Arginyl tRNA synthetase N terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005148, IPR036695, IPR009080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name argS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1865 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1877 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym lov Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1876 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product arginyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name arginine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006264: Trusted threshold=1602.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000703
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00750 tRNA synthetases class I (R) Protein Sequence Similarity - PFAM Model Name: PF00750
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008909 DALR anticodon binding Protein Sequence Similarity - InterPro Domain: IPR008909
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001278 Arginine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF05746 DALR anticodon binding domain Protein Sequence Similarity - PFAM Model Name: PF05746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005148 Arginyl tRNA synthetase N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR005148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035684 Arginyl-tRNA synthetase, catalytic core domain Protein Sequence Similarity - InterPro Domain: IPR035684
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036695
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03485 Arginyl tRNA synthetase N terminal domain Protein Sequence Similarity - PFAM Model Name: PF03485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.1.1.19 Published Annotation - Swiss-Prot Accession Number: P11875 Feb 2006
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10071 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788184 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946452 Published Annotation - Entrez Gene Database ID: 946452
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P11875 Published Annotation - Swiss-Prot Accession Number: P11875 Jan 2005
Automated Process Approved db xref ASAP:ABE-0006264 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P11875 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note arginine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74946.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005148, IPR036695, IPR009080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000703 argS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001574 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000233 argS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000203 argS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000917 argS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000406 argS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001094 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000415 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129512 argS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104950 argS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104353 argS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002543 argS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001468 argS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002660 argS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003410 argS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007092 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017058 argS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001861 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003256 argS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302414 argS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002258 argS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001534 argS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004460 argS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008333 argS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001834 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009652 argS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001770 argS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002510 argS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007428 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009027 argS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008440 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078410 argS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002099 argS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002438 argS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008405 argS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009334 argS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002125 argS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006545 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000131 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006008 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010297 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009694 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006090 argS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007453 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009154 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010656 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009793 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010279 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007908 argS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009593 argS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010003 argS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026672 argS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008125 argS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006648 argS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002315 argS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001770 argS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001926 argS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002096 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002291 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002017 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002148 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176309 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002143 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001309 argS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132570 argS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003973 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002087 argS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001839 argS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002616 argS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002396 argS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000623 argS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006949 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001608 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003417 argS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001559 argS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002505 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002286 argS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001929 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010068 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001569 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285662 argS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005474 argS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062783 argS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001309 argS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001844 argS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003888 argS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006644 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141596 argS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005216 argS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005391 argS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001078 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002249 argS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005610 argS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003636 argS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003550 argS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004516 argS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006486 argS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005426 argS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008285 argS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008284 argS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005603 argS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006433 argS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004339 argS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000959 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000960 argS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001262 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006674 argS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007617 argS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006147 argS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007742 argS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109204 argS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082682 argS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002324 argS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096176 argS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007395 argS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007033 argS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008285 argS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002979 argS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267766 argS CDS
Person Approved Go view Shigella boydii 227 ADV-0001231 argS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007580 argS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006842 argS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001339 argS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073116 argS CDS
Person Approved Go view Shigella flexneri 301 ABT-0088204 argS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002053 argS CDS
Person Approved Go view Shigella sonnei 046 ADD-0001339 argS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002150 VC2074 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000284 argS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003832 argS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000326 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006933 argS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002633 argS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000250 argS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003581 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238840 argS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006547 argS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001737 argS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004536 argS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001395 argS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122063 argS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005473 argS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006594 argS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003972 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008178 argS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005824 argS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031980 argS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005935 argS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001846 argS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001276 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007706 argS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006014 argS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002111 argS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002483 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002547 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015275 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003378 argS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1955062 to 1966795
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006244torZCDScomplement19545781957007Upstream
ABE-0006246torYCDScomplement19570321958132Upstream
ABE-0285775micLncRNAcomplement19584411958520Upstream
ABE-0006252cutCCDScomplement19585201959266Upstream
ABE-0006257yecMCDScomplement19592801959846Upstream
ABE-0006264argSCDSforward19600621961795Matches
ABE-0285811yecVCDScomplement19618371961881Downstream
ABE-0006268yecTCDSforward19619721962460Downstream
ABE-0006270flhECDScomplement19625801962972Downstream
ABE-0006272flhACDScomplement19629721965050Downstream
ABE-0006275flhBCDScomplement19650431966191Downstream
ABE-0285475repeat_regionforward19663221966384Downstream
ABE-0006278cheZCDScomplement19663931967037Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.