Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006328 (araG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006328 showshow history
Names
araG JW1888 ECK1898 b1900
Product
ATP-binding component of an ABC superfamily L-arabinose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1983555 1985069 1515 505
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Apr 2008
Automated Process Approved IPR017917 (IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042882 L-arabinose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017917
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Direct Assay - PubMed ID: 2445995
Reference: Escherichia coli BEK180 		Jul 2006
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015612 ABC-type L-arabinose transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017917
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name araG Published Sequence Analysis - PubMed ID: 2445996
Reference: Escherichia coli K-12 		Mar 2008
Person Approved synonym ECK1898 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1888 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1900 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of an ABC superfamily L-arabinose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name ATP-binding component of high-affinity L-arabinose transport system Published Sequence Analysis - PubMed ID: 2445996
Reference: Escherichia coli K-12 		Mar 2008
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG Protein Sequence Similarity - InterPro Domain: IPR017917
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 7.5.2.12 Published Annotation - Swiss-Prot Accession Number: P0AAF3
Reference: Escherichia coli K-12 		Dec 2019
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.100 (transport; substrate; L-arabinose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006328 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10058 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAF3 Published Annotation - Swiss-Prot Accession Number: P0AAF3 Jan 2006
Automated Process Approved db xref GI:1788210 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946408 Published Annotation - Entrez Gene Database ID: 946408
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAF3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of high-affinity L-arabinose transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74970.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042882 L-arabinose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017917
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Direct Assay - PubMed ID: 2445995
Reference: Escherichia coli BEK180 		Jul 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015612 ABC-type L-arabinose transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017917
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001909 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002422 araG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002335 araG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003647 araG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002590 araG CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001977 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002575 araG CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002687 araG_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003435 araG_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006943 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015567 araG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001980 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003285 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301424 araG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001892 araG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001829 araG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004476 araG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008310 araG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001853 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009629 araG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001789 araG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002488 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007403 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010247 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078432 araG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002123 araG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002462 araG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008380 araG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009359 araG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002147 araG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006568 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006031 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010320 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009717 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006113 araG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007476 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009131 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010633 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009821 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010302 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007884 araG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009916 araG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010026 araG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026695 araG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008101 araG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006674 araG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002337 araG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001788 araG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001948 araG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002075 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002312 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001996 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002168 araG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176331 araG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002164 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001285 araG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132592 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003949 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002107 araG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002937 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002403 araG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000652 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006642 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001174 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003926 araG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001188 araG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002927 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001889 araG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002337 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009506 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002587 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289265 araG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005014 araG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062536 araG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001326 araG CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000580 araG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000557 araG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006909 CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002684 CDS
Person Approved Go view Shigella boydii 227 ADV-0001210 araG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006420 araG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006812 araG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001269 araG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073148 araG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088231 araG CDS
Person Approved Go view Shigella sonnei 046 ADD-0001313 araG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002790 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005890 araG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003010 araG_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003346 araG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000400 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239196 araG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006375 araG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001953 araG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004752 araG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001201 araG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122757 araG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007102 araG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007667 araG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003031 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007458 araG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005970 araG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031804 araG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005722 araG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002078 araG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001047 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007107 araG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005855 araG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002259 araG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002667 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002362 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015398 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003349 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20508mutantTn5 InsertionRequest the StrainABE-0006328araGaraG::Tn5KAN-2 at position 835 in Minus orientation ,+ pKD460Blattner Laboratory
FB20509mutantTn5 InsertionRequest the StrainABE-0006328araGaraG::Tn5KAN-2 at position 835 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1978555 to 1990069
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006305mobile_elementcomplement19785031979270Downstream
ABE-0006308insB-5CDScomplement19785181979021Downstream
ABE-0006311insA-5CDScomplement19789401979215Downstream
ABE-0006316uspCCDSforward19797531980181Downstream
ABE-0006318otsACDScomplement19801881981612Downstream
ABE-0006320otsBCDScomplement19815871982387Downstream
ABE-0174093araHCDScomplement19825541983540Downstream
ABE-0006328araGCDScomplement19835551985069Matches
ABE-0006330araFCDScomplement19851391986128Upstream
ABE-0006333ftnBCDSforward19869251987428Upstream
ABE-0285058yecJCDScomplement19875071987758Upstream
ABE-0285207azuCCDScomplement19878731987959Upstream
ABE-0006338yecRCDSforward19882221988545Upstream
ABE-0006342ftnACDSforward19887161989213Upstream
ABE-0006344yecHCDScomplement19892511989490Upstream
ABE-0006355tyrPCDSforward19896811990892Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.