Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006367 (pgsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006367 showshow history
Names
pgsA JW1897 ECK1911 b1912
Product
phosphatidylglycerophosphate synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1992269 1992817 549 183
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000462 (IPR000462 CDP-alcohol phosphatidyltransferase) Apr 2008
Automated Process Approved IPR004570 (IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase) Apr 2008
Automated Process Approved PF01066 (PF01066 CDP-alcohol phosphatidyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004570
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004570
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pgsA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1911 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1897 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1912 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphatidylglycerophosphate synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name phosphatidylglycerophosphate synthetase (CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF01066 CDP-alcohol phosphatidyltransferase Protein Sequence Similarity - PFAM Model Name: PF01066
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000462 CDP-alcohol phosphatidyltransferase Protein Sequence Similarity - InterPro Domain: IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Protein Sequence Similarity - InterPro Domain: IPR004570
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.7.8.- Published Annotation - Database Name: EC2GO: GO:0016780
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.8.5 Published Annotation - Swiss-Prot Accession Number: P0ABF8 Feb 2006
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006367 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10706 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABF8 Published Annotation - Swiss-Prot Accession Number: P0ABF8 Jan 2006
Automated Process Approved db xref GI:1788220 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABF8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945791 Published Annotation - Entrez Gene Database ID: 945791
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Macromolecule synthesis, modification: Phospholipids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74979.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004570
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004570
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001430 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001935 pgsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001690 pgsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001063 pgsA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001325 pgsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000110 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000150 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002627 pgsA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001427 pgsA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002711 pgsA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003456 pgsA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006197 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020510 pgsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002611 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003302 pgsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300538 pgsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001572 pgsA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002143 pgsA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004489 pgsA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001867 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009514 pgsA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001797 pgsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002479 pgsA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007389 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078447 pgsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002139 pgsA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002477 pgsA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002160 pgsA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006582 pgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003947 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006081 pgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010370 pgsA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007524 pgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010583 pgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011241 pgsA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026737 pgsA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008501 pgsA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006688 pgsA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002346 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001796 pgsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001961 pgsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002064 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002376 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001985 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002183 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176340 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0002177 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001270 pgsA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132640 pgsA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003909 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002120 pgsA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002261 pgsA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002455 pgsA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002418 pgsA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000681 pgsA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006072 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000740 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004405 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000764 pgsA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003439 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001476 pgsA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002786 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009167 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003153 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288319 pgsA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004581 pgsA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063159 pgsA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000940 pgsA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000739 pgsA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002589 pgsA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007683 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141435 pgsA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003072 pgsA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005353 pgsA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001030 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002290 pgsA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005571 pgsA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003540 pgsA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003466 pgsA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004478 pgsA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006522 pgsA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008320 pgsA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005641 pgsA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006472 pgsA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004300 pgsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000926 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000924 pgsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001220 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006710 pgsA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006184 pgsA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008348 pgsA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109287 pgsA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082645 pgsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002366 pgsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096285 pgsA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007356 pgsA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009445 pgsA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003988 pgsA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265437 pgsA CDS
Person Approved Go view Shigella boydii 227 ADV-0001198 pgsA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006435 pgsA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001252 pgsA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073160 pgsA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088242 pgsA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002098 pgsA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001301 pgsA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001283 VC1215 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000484 pgsA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004630 pgsA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001852 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005402 pgsA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000270 pgsA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000372 pgsA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003453 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237916 pgsA2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006167 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001506 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004339 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001553 pgsA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121488 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007311 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006147 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006985 pgsA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032166 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006134 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002713 pgsA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001506 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007324 pgsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006228 pgsA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001814 pgsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002214 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002790 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015469 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003332 pgsA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1987269 to 1997817
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006333ftnBCDSforward19869251987428Downstream
ABE-0285058yecJCDScomplement19875071987758Downstream
ABE-0285207azuCCDScomplement19878731987959Downstream
ABE-0006338yecRCDSforward19882221988545Downstream
ABE-0006342ftnACDSforward19887161989213Downstream
ABE-0006344yecHCDScomplement19892511989490Downstream
ABE-0006355tyrPCDSforward19896811990892Downstream
ABE-0006357yecACDScomplement19909541991619Downstream
ABE-0285793ncRNAcomplement19917481991814Downstream
ABE-0006361leuZtRNAcomplement19918151991901Downstream
ABE-0006363cysTtRNAcomplement19919141991987Downstream
ABE-0006365glyWtRNAcomplement19920421992117Downstream
ABE-0006367pgsACDScomplement19922691992817Matches
ABE-0006370uvrCCDScomplement19928741994706Upstream
ABE-0006373uvrYCDScomplement19947031995359Upstream
ABE-0285763yecUCDSforward19956551995831Upstream
ABE-0006379yecFCDSforward19958181996042Upstream
ABE-0006381sdiACDScomplement19961101996832Upstream
ABE-0285794sdsNncRNAforward19969211997057Upstream
ABE-0006384tcyNCDScomplement19970621997814Upstream
ABE-0006386tcyLCDScomplement19978111998479Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.