Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006389 (dcyD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006389 showshow history
Names
dcyD yedO JW5313 ECK1918 b1919
Product
D-cysteine desulfhydrase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1998494 1999480 987 329
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000722
EnteroFam0006389: Trusted threshold=859.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001926 (IPR001926 Pyridoxal-phosphate dependent enzyme) Apr 2008
Automated Process Approved IPR005966 (IPR005966 D-cysteine desulfhydrase) Apr 2008
Automated Process Approved IPR036052 (IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme) Jul 2018
Automated Process Approved PF00291 (PF00291 Pyridoxal-phosphate dependent enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dcyD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Aug 2006
Person Approved synonym ECK1918 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5313 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yedO Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b1919 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-cysteine desulfhydrase, PLP-dependent Experimental - PubMed ID: 11527960
Reference: Escherichia coli K-12 		Aug 2006
Protein Family
Person Approved EnteroFam EnteroFam0006389: Trusted threshold=859.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000722
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001926 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005966 D-cysteine desulfhydrase Protein Sequence Similarity - InterPro Domain: IPR005966
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR036052
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00291 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - PFAM Model Name: PF00291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.4.1.15 Experimental - PubMed ID: 3908101
Reference: Escherichia coli K-12 W3110 		Aug 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14038 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76316 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946831 Published Annotation - Entrez Gene Database ID: 946831
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082000 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006389 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76316 Published Annotation - Swiss-Prot Accession Number: P76316 Jan 2005
Person Approved function catalyzes the alpha,beta-elimination of D-cysteine, yielding pyruvate, ammonia, and hydrogen sulfide Experimental - PubMed ID: 11527960
Reference: Escherichia coli K-12 		Aug 2006
Person Approved molecular interaction Interacts with the product of sucB ASAP:2480:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note putative 1-aminocyclopropane-1-carboxylate deaminase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74986.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000722 dcyD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002214 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001931 dcyD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001785 dcyD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001935 dcyD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001773 dcyD CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002634 dcyD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001419 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002718 dcyD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003463 dcyD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008732 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018630 dcyD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000471 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003309 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001485 dcyD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004496 dcyD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008929 dcyD CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009506 dcyD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001803 yedO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002472 CDS
Person Approved Go view Escherichia coli ATCC 8739 AEM-0007382 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009769 dcyD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008692 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078455 dcyD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002147 dcyD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002486 dcyD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009855 dcyD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010369 dcyD CDS
Person Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002167 dcyD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006590 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000398 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006090 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010379 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009835 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009956 dcyD CDS
Person Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007533 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009901 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010574 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010124 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010891 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010003 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009968 dcyD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010584 dcyD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026744 dcyD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008494 dcyD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006696 dcyD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002354 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001803 dcyD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001968 dcyD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002057 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002368 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001977 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002191 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176347 CDS
Person Approved Go view Escherichia coli SE11 AFS-0002185 CDS
Person Approved Go view Escherichia coli SMS-3-5 AFT-0001262 dcyD CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285308 dcyD pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003901 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002127 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001513 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002425 yedO CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000688 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005898 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001648 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001774 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001603 dcyD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002455 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002331 dcyD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001826 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010109 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001530 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289704 dcyD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005515 yedO CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061784 dcyD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000871 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001610 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001802 dcyD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006158 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005257 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005345 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001021 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002299 dcyD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005563 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003514 yedO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003440 yedO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004470 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006530 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008379 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008328 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008371 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005649 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006479 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004293 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000918 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000916 dcyD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001212 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006718 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007945 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006192 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008356 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109313 dcyD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082637 dcyD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002374 yedO CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096309 dcyD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007348 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009124 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007679 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002851 CDS
Person Approved Go view Shigella boydii 227 ADV-0001191 dcyD CDS
Person Approved Go view Shigella boydii BS512 ADJ-0006443 dcyD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007884 dcyD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001243 dcyD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073167 dcyD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088249 dcyD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002105 yedO CDS
Person Approved Go view Shigella sonnei 046 ADD-0001294 dcyD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001827 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007224 YedO CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000336 YedO CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000398 dcyD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002617 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237987 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006142 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001477 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004313 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001575 dcyD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121400 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007285 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006171 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002529 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008116 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007012 dcyD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032188 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006159 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002740 dcyD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001533 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007350 dcyD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006254 dcyD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001793 dcyD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002186 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002819 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015517 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003325 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1993494 to 2004480
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006370uvrCCDScomplement19928741994706Downstream
ABE-0006373uvrYCDScomplement19947031995359Downstream
ABE-0285763yecUCDSforward19956551995831Downstream
ABE-0006379yecFCDSforward19958181996042Downstream
ABE-0006381sdiACDScomplement19961101996832Downstream
ABE-0285794sdsNncRNAforward19969211997057Downstream
ABE-0006384tcyNCDScomplement19970621997814Downstream
ABE-0006386tcyLCDScomplement19978111998479Downstream
ABE-0006389dcyDCDScomplement19984941999480Matches
ABE-0006392tcyJCDScomplement19995852000385Upstream
ABE-0006394fliZCDScomplement20004732001024Upstream
ABE-0006396fliACDScomplement20010702001789Upstream
ABE-0285476repeat_regionforward20019682002066Upstream
ABE-0006402fliCCDScomplement20021102003606Upstream
ABE-0006407fliDCDSforward20038722005278Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.