Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006392 (tcyJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006392 showshow history
Names
tcyJ yzzR fliY JW1905 ECK1919 b1920
Product
periplasmic substrate-binding component of an ABC superfamily cystine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1999585 2000385 801 267
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000723
EnteroFam0006392: Trusted threshold=620.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Apr 2008
Automated Process Approved IPR001320 (IPR001320 Ionotropic glutamate receptor) Apr 2008
Automated Process Approved PF00497 (PF00497 Bacterial extracellular solute-binding proteins, family 3) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042883 cysteine transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005234 extracellularly glutamate-gated ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004970 ionotropic glutamate receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name tcyJ Published Annotation - PubMed ID: 26350134
Reference: Escherichia coli K-12 MG1655 		Jun 2016
Person Approved synonym JW1905 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym fliY Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1919 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yzzR Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1920 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic substrate-binding component of an ABC superfamily cystine transporter Experimental - PubMed ID: 26350134
Reference: Escherichia coli K-12 MG1655 		Jun 2016
Person Approved alternate product name putative periplasmic binding transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name cystine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name cysteine transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name cystine transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jun 2016
Protein Family
Person Approved EnteroFam EnteroFam0006392: Trusted threshold=620.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000723
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00497 Bacterial extracellular solute-binding proteins, family 3 Protein Sequence Similarity - PFAM Model Name: PF00497
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001320 Ionotropic glutamate receptor Protein Sequence Similarity - InterPro Domain: IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.39 (transport; substrate; cysteine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.12 (metabolism; building block biosynthesis; amino acids; cysteine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12680 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEM9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEM9 Published Annotation - Swiss-Prot Accession Number: P0AEM9 Jan 2006
Automated Process Approved db xref GeneID:948833 Published Annotation - Entrez Gene Database ID: 948833
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006392 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0019344 - cysteine biosynthetic process; GO_process: GO:0042883 - cysteine transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74987.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042883 cysteine transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005234 extracellularly glutamate-gated ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004970 ionotropic glutamate receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000350 CDS
Member
Person Approved Go view EnteroFams ADX-0000723 fliY CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001179 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001324 fliY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001687 tcyJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001787 fliY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001745 tcyJ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002635 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001418 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002719 fliY_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003464 fliY_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009004 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017013 fliY CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000255 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003310 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304639 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002810 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004497 fliY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008928 fliY CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009505 fliY CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001804 fliY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002471 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007380 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009768 fliY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008691 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078458 fliY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002148 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002487 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009854 fliY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010370 fliY CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002168 fliY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006591 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000399 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006091 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010380 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009836 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009957 fliY CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007534 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009902 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010573 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010125 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010892 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010002 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009969 fliY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010583 fliY CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026745 fliY CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008493 fliY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006697 fliY CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002356 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001804 fliY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001969 fliY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002056 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002367 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001976 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002192 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176348 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002186 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001261 fliY CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132649 fliY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003900 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002128 fliY CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001514 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002426 fliY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000690 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008766 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001647 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001773 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001602 fliY CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002456 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002330 fliY CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001827 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010108 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001531 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289705 fliY CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005514 fliY CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060465 fliY CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000160 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000083 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000007 fliY CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004723 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005258 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005344 fliY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001020 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002300 fliY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005562 fliY CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003510 fliY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003436 fliY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004469 fliY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006531 fliY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008380 fliY CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008329 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008372 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005650 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006480 fliY CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004292 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000917 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000915 fliY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001210 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006719 fliY CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007944 fliY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006193 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008357 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109316 fliY CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082636 fliY CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002375 fliY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096312 fliY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007347 fliY CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009125 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007680 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002852 CDS
Person Approved Go view Shigella boydii 227 ADV-0001190 fliY CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006444 fliY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007886 fliY CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001242 fliY CDS
Person Approved Go view Shigella flexneri 301 ABT-0088250 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002106 fliY CDS
Person Approved Go view Shigella sonnei 046 ADD-0001291 fliY CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000011 VC0010 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001828 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007220 fliY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000335 fliY_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000397 fliY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002618 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237986 fliY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006144 fliY CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001478 fliY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004315 fliY CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001574 fliY CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121402 fliY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007287 fliY CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006169 fliY CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000866 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008118 fliY CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007010 fliY CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032186 fliY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006157 fliY CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002738 fliY CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007348 fliY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006252 fliY CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001794 fliY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002187 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002817 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015522 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003324 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1994585 to 2005385
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006370uvrCCDScomplement19928741994706Downstream
ABE-0006373uvrYCDScomplement19947031995359Downstream
ABE-0285763yecUCDSforward19956551995831Downstream
ABE-0006379yecFCDSforward19958181996042Downstream
ABE-0006381sdiACDScomplement19961101996832Downstream
ABE-0285794sdsNncRNAforward19969211997057Downstream
ABE-0006384tcyNCDScomplement19970621997814Downstream
ABE-0006386tcyLCDScomplement19978111998479Downstream
ABE-0006389dcyDCDScomplement19984941999480Downstream
ABE-0006392tcyJCDScomplement19995852000385Matches
ABE-0006394fliZCDScomplement20004732001024Upstream
ABE-0006396fliACDScomplement20010702001789Upstream
ABE-0285476repeat_regionforward20019682002066Upstream
ABE-0006402fliCCDScomplement20021102003606Upstream
ABE-0006407fliDCDSforward20038722005278Upstream
ABE-0006409fliSCDSforward20053032005713Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.