Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006414 (amyA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006414 showshow history
Names
amyA yedC JW1912 ECK1926 b1927
Product
cytoplasmic alpha-amylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2006156 2007643 1488 496
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR006589 (IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain) Apr 2008
Automated Process Approved IPR006047 (IPR006047 Glycosyl hydrolase, family 13, catalytic domain) Apr 2008
Automated Process Approved IPR006048 (IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta) Apr 2008
Automated Process Approved IPR013776 (IPR013776 Alpha-amylase, thermostable) Apr 2008
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF02806 (PF02806 Alpha amylase, C-terminal all-beta domain) Jul 2018
Automated Process Approved PF00128 (PF00128 Alpha amylase, catalytic domain) Jul 2018
Automated Process Uncurated GH13 (GH13 Glycoside Hydrolase Family 13) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000272 polysaccharide catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005509 calcium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name amyA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1912 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yedC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1926 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1927 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cytoplasmic alpha-amylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name cytoplasmic alpha-amylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00128 Alpha amylase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00128
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH13 Glycoside Hydrolase Family 13 Protein Sequence Similarity - CAZy Model Name: GH13
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013776 Alpha-amylase, thermostable Protein Sequence Similarity - InterPro Domain: IPR013776
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta Protein Sequence Similarity - InterPro Domain: IPR006048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006047 Glycosyl hydrolase, family 13, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006047
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006589
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02806 Alpha amylase, C-terminal all-beta domain Protein Sequence Similarity - PFAM Model Name: PF02806
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.1.1 Published Annotation - Swiss-Prot Accession Number: P26612 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.2.4 (metabolism; macromolecule degradation; polysaccharides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11387 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946434 Published Annotation - Entrez Gene Database ID: 946434
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P26612 Published Annotation - Swiss-Prot Accession Number: P26612 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26612 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788236 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006414 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of polysaccharides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0000272 - polysaccharide catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74994.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0000272 polysaccharide catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005509 calcium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006755 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002589 amyA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002685 amyA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003145 amyA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002515 amyA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002643 amyA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001405 amyA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002726 amyS CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003471 amyS CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003325 amyA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302582 amyA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002319 amyA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001477 amyA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008920 amyA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001876 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009497 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001811 amyA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002463 amyA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007373 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009761 amyA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008683 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078465 amyA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002157 amyK38 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002495 amyS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009847 amyA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010377 amyA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002175 amyA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006599 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000408 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006099 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010388 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009844 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009965 amyA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007542 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009910 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010565 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010133 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010900 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009994 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009977 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010575 amyA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026752 amyA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008485 amyA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006704 amyA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002364 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001810 amyA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001976 amyA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002049 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002359 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001969 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002199 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176355 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002193 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001253 amyA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132656 amyA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003892 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002135 amyA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002427 amyA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000697 amyA CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001658 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001784 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001630 amyA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002428 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002354 amyA pseudogene
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001805 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0006803 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001520 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005525 amyA pseudogene
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005335 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002311 amyA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005553 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003487 amyA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003412 amyA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004460 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006540 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008389 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008339 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008382 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005659 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006489 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004283 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000909 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000907 amyA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001196 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006728 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007935 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006203 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008367 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109338 amyA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082628 amyA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002386 amyA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096340 amyA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007338 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009135 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007691 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004448 CDS
Person Approved Go view Shigella boydii 227 ADV-0001183 amyA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006453 amyA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001232 amyA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073175 amyA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088256 amyA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002113 amyA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002178 amyA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001846 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005752 amyA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000277 amyA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000379 amyA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003458 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015569 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003312 amyA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20533mutantTn5 InsertionRequest the StrainABE-0006414amyAamyA::Tn5KAN-2 at position 654 in Minus orientation ,+ pKD460Blattner Laboratory
FB20534mutantTn5 InsertionRequest the StrainABE-0006414amyAamyA::Tn5KAN-2 at position 654 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2001156 to 2012643
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006396fliACDScomplement20010702001789Upstream
ABE-0285476repeat_regionforward20019682002066Upstream
ABE-0006402fliCCDScomplement20021102003606Upstream
ABE-0006407fliDCDSforward20038722005278Upstream
ABE-0006409fliSCDSforward20053032005713Upstream
ABE-0006411fliTCDSforward20057132006078Upstream
ABE-0006414amyACDSforward20061562007643Matches
ABE-0006416yedDCDScomplement20076772008090Downstream
ABE-0006422yedECDSforward20082772009482Downstream
ABE-0006425yedFCDSforward20094792009712Downstream
ABE-0006428yedKCDSforward20098212010489Downstream
ABE-0006433yedLCDSforward20106002011079Downstream
ABE-0285096yedNpseudogenecomplement20112172012351Downstream
ABE-0006435yedN_3CDSpcomplement20113482011539Downstream
ABE-0006437yedN_2CDSpcomplement20115492011869Downstream
ABE-0006440yedN_1CDSpcomplement20120012012351Downstream
ABE-0006445intGpseudogeneforward20125352012659Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.