Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006579 (amn) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006579 showshow history
Names
amn JW1963 ECK1977 b1982
Product
AMP nucleosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2055061 2056515 1455 485
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000741
EnteroFam0006579: Trusted threshold=1260.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Apr 2008
Automated Process Approved IPR011271 (IPR011271 AMP nucleosidase) Apr 2008
Automated Process Approved IPR018953 (IPR018953 AMP nucleoside phosphorylase, N-terminal) Jul 2018
Automated Process Approved IPR035994 (IPR035994 Nucleoside phosphorylase superfamily) Jul 2018
Automated Process Approved PF10423 (PF10423 Bacterial AMP nucleoside phosphorylase N-terminus) Jul 2018
Automated Process Approved PF01048 (PF01048 Phosphorylase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0044209 AMP salvage GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008714 AMP nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name amn Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1977 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1963 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1982 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product AMP nucleosidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name AMP nucleosidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006579: Trusted threshold=1260.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000741
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR018953 AMP nucleoside phosphorylase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR018953
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035994 Nucleoside phosphorylase superfamily Protein Sequence Similarity - InterPro Domain: IPR035994
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011271 AMP nucleosidase Protein Sequence Similarity - InterPro Domain: IPR011271
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Protein Sequence Similarity - PFAM Model Name: PF10423
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01048 Phosphorylase superfamily Protein Sequence Similarity - PFAM Model Name: PF01048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.2.4 Published Annotation - Swiss-Prot Accession Number: P0AE12 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AE12 Published Annotation - Swiss-Prot Accession Number: P0AE12 Jan 2006
Automated Process Approved db xref GeneID:946508 Published Annotation - Entrez Gene Database ID: 946508
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788293 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AE12 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006579 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10039 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0042597 - periplasmic space; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75046.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0044209 AMP salvage GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008714 AMP nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000741 amn CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001425 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001875 amn CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001737 amn CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002002 amn CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001751 amn CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003753 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000012 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002707 amn CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001292 amn CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002827 amn CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007767 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015894 amn CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001323 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003472 amn CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302695 amn CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002368 amn CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001426 amn CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003573 amn CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009526 amn CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001971 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009438 amn CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001919 amn CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002401 amn CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007313 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010246 amn CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009962 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078570 amn CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002272 amn CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002612 amn CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009611 amn CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010735 amn CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002223 amn CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006701 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005353 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010506 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010586 amn CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007664 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010442 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010885 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009724 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010535 amn CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010360 amn CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009670 amn CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026866 amn CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009339 amn CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006780 amn CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002452 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001861 amn CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002034 amn CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001989 amn CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002401 amn CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001898 amn CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002291 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176421 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002305 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001142 amn CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132776 amn CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004691 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002202 amn CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004209 amn CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002905 amn CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002453 amn CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000796 amn CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005795 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001721 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001838 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001706 amn CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002329 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002444 amn CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001702 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010187 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001467 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287226 amn CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005588 amn CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061800 amn CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000892 amn CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001615 amn CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001822 amn CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006182 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004871 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006285 amn CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000918 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002374 amn CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006611 amn CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006411 amn CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006092 amn CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004409 amn CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006593 amn CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008835 amn CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008714 amn CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005714 amn CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006542 amn CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009316 amn CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000867 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000864 amn CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001105 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006782 amn CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007882 amn CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006250 amn CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109437 amn CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082581 amn CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002499 amn CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096461 amn CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007278 amn CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009395 amn CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009279 amn CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002657 amn CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006382 amn CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002595 amn CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073271 amn CDS
Person Approved Go view Shigella flexneri 301 ABT-0088338 amn CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002203 amn CDS
Person Approved Go view Shigella sonnei 046 ADD-0002250 amn CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003527 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006037 amn CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002961 amn CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000647 amn CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000445 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239263 amn CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001976 amn CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004777 amn CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001170 amn CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122879 amn CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007081 amn CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007515 amn CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001017 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007978 amn CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005948 amn CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031826 amn CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008167 amn CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002105 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001020 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007086 amn CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005817 amn CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002295 amn CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002721 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002311 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016008 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003231 amn CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20556mutantTn5 InsertionRequest the StrainABE-0006579amnamn::Tn5KAN-2 at position 239 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2050061 to 2061515
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006563yeeJCDSforward20449382052014Upstream
ABE-0006565yeeL_2CDSpcomplement20522762052602Upstream
ABE-0285098yeeLpseudogenecomplement20522762053328Upstream
ABE-0006568yeeL_1CDSpcomplement20526242053328Upstream
ABE-0006572shiACDSforward20536432054959Upstream
ABE-0006579amnCDSforward20550612056515Matches
ABE-0006582yeeNCDSforward20568582057574Downstream
ABE-0006584asnWtRNAcomplement20580272058102Downstream
ABE-0006586yeeOCDScomplement20582032059657Downstream
ABE-0006588asnUtRNAforward20598512059926Downstream
ABE-0006590cblCDScomplement20599642060914Downstream
ABE-0006594nacCDScomplement20610162061933Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.