Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006586 (yeeO) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006586 showshow history
Names
yeeO JW1965 ECK1980 b1985
Product
flavin exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2058203 2059657 1455 485
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002528 (IPR002528 Multi antimicrobial extrusion protein) Apr 2008
Automated Process Approved PF01554 (PF01554 MatE) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006855 drug transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015297 antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015238 (DEPRECATED) drug transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yeeO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1965 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1980 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1985 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product flavin exporter Experimental - PubMed ID: 25482085
Reference: Escherichia coli K-12 BW25113 		Aug 2020
Automated Process Approved alternate product name predicted multdrug exporter, MATE family Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name predicted multidrug efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Aug 2020
Person Uncurated alternate product name putative transport protein (MATE family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR002528 Multi antimicrobial extrusion protein Protein Sequence Similarity - InterPro Domain: IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01554 MatE Protein Sequence Similarity - PFAM Model Name: PF01554
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.2.A.66 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Multi Antimicrobial Extrusion (MATE) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of yeeO have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site determined by an EasyGene prediction, removing 63 codons from the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 MG1655 		Oct 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76352 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006586 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946506 Published Annotation - Entrez Gene Database ID: 946506
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:226510954 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13383 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76352 Published Annotation - Swiss-Prot Accession Number: P76352 Jan 2005
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75048.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006855 drug transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015238 (DEPRECATED) drug transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015297 antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002528
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000597 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002393 yeeO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002090 yeeO CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001827 yeeO CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001863 yeeO CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002720 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001285 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002829 mdtK_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006218 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018770 yeeO CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002600 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003474 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302735 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002386 yeeO CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001419 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001978 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009434 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001922 yeeO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002399 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007310 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010573 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078576 yeeO CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002276 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002616 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002256 yeeO CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006704 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001466 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010511 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010591 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007669 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010437 CDS
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285446 yeeO pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010231 yeeO CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006783 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001863 yeeO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002037 yeeO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001986 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002398 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001895 CDS
Person Uncurated Go view Escherichia coli SE11 AFS-0005224 yeeO pseudogene
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001138 CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285473 yeeO pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004687 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002206 yeeO CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001149 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001876 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002455 yeeO CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000798 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006143 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001719 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001836 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001705 yeeO CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002330 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002443 yeeO CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001703 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010181 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001468 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005586 yeeO CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063035 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003465 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002986 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004482 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006385 CDS
Person Uncurated Go view Salmonella Agona SL483 BBX-0006289 CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0000915 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002380 yeeO CDS
Person Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006615 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0006417 yeeO CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0006098 yeeO CDS
Person Uncurated Go view Salmonella Heidelberg SL476 BBV-0006597 CDS
Person Uncurated Go view Salmonella Newport SL254 BBQ-0006546 CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0000860 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004469 yeeO pseudogene
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0001102 CDS
Person Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006254 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109445 CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082575 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002504 yeeO CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096470 yeeO CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002677 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264357 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001342 yeeO pseudogene
Person Uncurated Go view Shigella boydii BS512 ADJ-0010831 yeeO pseudogene
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005715 yeeO pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073274 yeeO pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0088341 yeeO pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0004829 yeeO pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0002247 yeeO CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000513 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007711 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000439 mdtK_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002675 mdtK_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001253 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237743 norM1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005808 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001054 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005705 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001853 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120515 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005710 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005776 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003289 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009002 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004872 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032324 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007728 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002897 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001682 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006543 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006389 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001652 yeeO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002009 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002970 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016161 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003192 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2053203 to 2064657
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285098yeeLpseudogenecomplement20522762053328Downstream
ABE-0006568yeeL_1CDSpcomplement20526242053328Downstream
ABE-0006572shiACDSforward20536432054959Downstream
ABE-0006579amnCDSforward20550612056515Downstream
ABE-0006582yeeNCDSforward20568582057574Downstream
ABE-0006584asnWtRNAcomplement20580272058102Downstream
ABE-0006586yeeOCDScomplement20582032059657Matches
ABE-0006588asnUtRNAforward20598512059926Upstream
ABE-0006590cblCDScomplement20599642060914Upstream
ABE-0006594nacCDScomplement20610162061933Upstream
ABE-0006605asnVtRNAforward20622602062335Upstream
ABE-0006607ldtACDScomplement20623912063323Upstream
ABE-0006611cobTCDScomplement20633882064467Upstream
ABE-0006613cobSCDScomplement20644792065222Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.