Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006696 (plaP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006696 showshow history
Names
plaP JW5330 ECK2008 yeeF b2014
Product
low affinity putrescine importer
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2085704 2087062 1359 453
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Apr 2008
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Apr 2008
Automated Process Approved PF13520 (PF13520 Amino acid permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name plaP Published Annotation - PubMed ID: 21266585
Reference: Escherichia coli K-12 		Sep 2018
Person Approved synonym ECK2008 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5330 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yeeF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2014 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product low affinity putrescine importer Experimental - PubMed ID: 21266585
Reference: Escherichia coli K-12 		Sep 2018
Person Approved alternate product name putative amino acid/amine transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative amino acid transport protein (APC family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted amino-acid transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name putrescine importer, low affinity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF13520 Amino acid permease Protein Sequence Similarity - PFAM Model Name: PF13520
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.3 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Amino Acid-Polyamine-Choline (APC) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.12 (transport; substrate; amino acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11896 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006696 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946533 Published Annotation - Entrez Gene Database ID: 946533
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AA47 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082023 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AA47 Published Annotation - Swiss-Prot Accession Number: P0AA47 Jan 2006
Automated Process Approved function transport; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative amino acid/amine transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75075.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by acetate; expression is reduced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267724 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000962 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000052 puuP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000045 puuP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000030 puuP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000050 puuP CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002780 plaP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001262 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002884 plaP CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003561 plaP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007147 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020183 plaP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001818 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003481 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302747 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002392 yeeF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001413 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003532 yeeF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004968 yeeF CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009375 yeeF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001964 yeeF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002354 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007271 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008417 yeeF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008034 YeeF CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078673 plaP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002351 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002679 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006372 yeeF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002293 yeeF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006742 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004371 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006347 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010618 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008827 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007787 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008150 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005634 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009449 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009177 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009651 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006846 yeeF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008975 yeeF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026899 yeeF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004833 plaP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006824 yeeF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002580 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001890 yeeF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002068 yeeF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002487 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002451 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002387 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002378 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176516 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002327 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001044 yeeF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132820 yeeF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001993 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002293 yeeF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002310 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003990 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002480 yeeF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000804 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006996 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001835 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001951 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001791 yeeF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002247 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002531 yeeF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001615 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010292 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001346 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289482 yeeF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005705 yeeF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062830 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001550 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000669 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001964 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006586 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006361 yeeF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000852 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002441 yeeF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006672 yeeF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006585 yeeF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006259 yeeF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004349 yeeF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006654 yeeF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005954 yeeF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006400 yeeF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004037 yeeF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005783 yeeF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006608 yeeF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007663 yeeF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000803 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000803 yeeF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000975 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006843 yeeF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006294 yeeF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006373 yeeF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005596 yeeF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109588 yeeF CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082519 yeeF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002564 yeeF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096628 yeeF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007215 yeeF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004727 yeeF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005342 yeeF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002534 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000917 yeeF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006620 yeeF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003763 yeeF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002563 yeeF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073309 yeeF CDS
Person Approved Go view Shigella flexneri 301 ABT-0088359 yeeF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002226 yeeF CDS
Person Approved Go view Shigella sonnei 046 ADD-0002288 yeeF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004937 yeeF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000456 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007926 yeeF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000512 plaP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001373 plaP_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001315 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237700 yeeF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007199 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001037 yeeF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005686 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001840 yeeF CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120454 yeeF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005691 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004353 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008982 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004890 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032344 yeeF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007745 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002913 yeeF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001698 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006559 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006404 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001640 yeeF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001993 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002985 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016221 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003175 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20572mutantTn5 InsertionRequest the StrainABE-0006696plaPyeeF::Tn5KAN-I-SceI at position 544 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2080704 to 2092062
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006670sbmCCDScomplement20807892081262Downstream
ABE-0006680dacDCDScomplement20813812082547Downstream
ABE-0006686sbcBCDSforward20827562084183Downstream
ABE-0006688tsuBCDScomplement20842262084453Downstream
ABE-0006691tsuACDScomplement20844672085525Downstream
ABE-0006696plaPCDScomplement20857042087062Matches
ABE-0285221yoeICDScomplement20870522087114Overlaps Upstream
ABE-0006700yeeYCDScomplement20873292088258Upstream
ABE-0006702yeeZCDScomplement20883042089128Upstream
ABE-0285060yoeBCDScomplement20892112089465Upstream
ABE-0006705yefMCDScomplement20894622089713Upstream
ABE-0006710hisLCDSforward20899962090046Upstream
ABE-0006713hisGCDSforward20901922091091Upstream
ABE-0006715hisDCDSforward20910972092401Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.