Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006713 (hisG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006713 showshow history
Names
hisG JW2001 ECK2014 b2019
Product
ATP phosphoribosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2090192 2091091 900 300
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000746
EnteroFam0006713: Trusted threshold=871.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013820 (IPR013820 ATP phosphoribosyltransferase, catalytic domain) Apr 2008
Automated Process Approved IPR013115 (IPR013115 Histidine biosynthesis HisG, C-terminal) Apr 2008
Automated Process Approved IPR001348 (IPR001348 ATP phosphoribosyltransferase HisG) Apr 2008
Automated Process Approved IPR002187 (IPR002187 Nitrogen regulatory protein PII) Apr 2008
Automated Process Approved IPR011322 (IPR011322 Nitrogen regulatory PII-like, alpha/beta) Jul 2018
Automated Process Approved PF01634 (PF01634 ATP phosphoribosyltransferase) Jul 2018
Automated Process Approved PF08029 (PF08029 HisG, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006808 regulation of nitrogen utilization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013115
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030234 enzyme regulator activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003879 ATP phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2001 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2014 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2019 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP phosphoribosyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name ATP phosphoribosyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006713: Trusted threshold=871.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000746
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013115 Histidine biosynthesis HisG, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01634 ATP phosphoribosyltransferase Protein Sequence Similarity - PFAM Model Name: PF01634
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08029 HisG, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF08029
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011322 Nitrogen regulatory PII-like, alpha/beta Protein Sequence Similarity - InterPro Domain: IPR011322
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002187 Nitrogen regulatory protein PII Protein Sequence Similarity - InterPro Domain: IPR002187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001348 ATP phosphoribosyltransferase HisG Protein Sequence Similarity - InterPro Domain: IPR001348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013820 ATP phosphoribosyltransferase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.4.2.17 Published Annotation - Swiss-Prot Accession Number: P60757 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.16 (metabolism; building block biosynthesis; amino acids; histidine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P60757 Published Annotation - Swiss-Prot Accession Number: P60757 Jan 2006
Automated Process Approved db xref GI:1788330 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006713 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60757 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10449 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946549 Published Annotation - Entrez Gene Database ID: 946549
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Histidine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000105 - histidine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75080.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006808 regulation of nitrogen utilization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0030234 enzyme regulator activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013115
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003879 ATP phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000746 hisG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001540 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000248 hisG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000424 hisG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001415 hisG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000840 hisG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000730 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000356 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129369 hisG CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104819 hisG CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104206 hisG CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002784 hisG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001258 hisG CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002889 hisG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003566 hisG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007165 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019054 hisG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001806 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003484 hisG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302757 hisG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002395 hisG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001409 hisG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003528 hisG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004975 hisG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002080 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009369 hisG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001969 hisG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002349 hisG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007267 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008410 hisG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008027 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078680 hisG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002356 hisG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002684 hisG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010359 hisG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006378 hisG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002299 hisG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006747 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004374 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006352 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010622 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008831 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009760 hisG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007792 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008146 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005638 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009452 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009182 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009655 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006842 hisG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008980 hisG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026905 hisG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004840 hisG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006830 hisG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002575 hisG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001895 hisG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002074 hisG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002495 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002442 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002393 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002384 hisG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176521 hisG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002333 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001040 hisG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132824 hisG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001990 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002299 hisG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001403 hisG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002182 hisG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002483 hisG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000807 hisG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007013 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001842 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001958 hisG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001797 hisG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002240 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002538 hisG CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001608 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010302 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001340 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289489 hisG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005712 hisG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062846 hisG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001483 hisG CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001859 hisG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001981 hisG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006569 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140345 hisG CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004513 hisG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006365 hisG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000845 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002444 hisG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006676 hisG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006596 hisG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006269 hisG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004345 hisG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006659 hisG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005959 hisG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006405 hisG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004041 hisG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005788 hisG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006613 hisG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007659 hisG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000800 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000800 hisG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000969 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006848 hisG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006299 hisG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006378 hisG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005601 hisG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109598 hisG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082515 hisG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002569 hisG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096638 hisG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007211 hisG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004723 hisG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005347 hisG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004194 hisG CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265654 hisG CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000922 hisG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006614 hisG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003759 hisG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002559 hisG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073316 hisG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088367 hisG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002233 hisG CDS
Person Approved Go view Shigella sonnei 046 ADD-0002294 hisG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001200 VC1132 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002700 hisG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000451 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007944 hisG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000517 hisG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001368 hisG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001320 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237683 hisG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007289 hisG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001028 hisG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005678 hisG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001834 hisG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120429 hisG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005684 hisG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004360 hisG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001229 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008974 hisG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004898 hisG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032352 hisG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007752 hisG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002922 hisG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001708 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006566 hisG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006411 hisG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001634 hisG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001983 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002994 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016235 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003172 hisG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20575mutantTn5 InsertionRequest the StrainABE-0006713hisGhisG::Tn5KAN-2 at position 466 in Minus orientation ,+ pKD460Blattner Laboratory
FB20576mutantTn5 InsertionRequest the StrainABE-0006713hisGhisG::Tn5KAN-2 at position 466 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2085192 to 2096091
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006691tsuACDScomplement20844672085525Upstream
ABE-0006696plaPCDScomplement20857042087062Upstream
ABE-0285221yoeICDScomplement20870522087114Upstream
ABE-0006700yeeYCDScomplement20873292088258Upstream
ABE-0006702yeeZCDScomplement20883042089128Upstream
ABE-0285060yoeBCDScomplement20892112089465Upstream
ABE-0006705yefMCDScomplement20894622089713Upstream
ABE-0006710hisLCDSforward20899962090046Upstream
ABE-0006713hisGCDSforward20901922091091Matches
ABE-0006715hisDCDSforward20910972092401Downstream
ABE-0006717hisCCDSforward20923982093468Downstream
ABE-0006720hisBCDSforward20934682094535Downstream
ABE-0006722hisHCDSforward20945352095125Downstream
ABE-0006725hisACDSforward20951252095862Downstream
ABE-0006727hisFCDSforward20958442096620Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.