Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006725 (hisA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006725 showshow history
Names
hisA JW2006 ECK2019 b2024
Product
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2095125 2095862 738 246
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000751
EnteroFam0006725: Trusted threshold=662.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006062 (IPR006062 Histidine biosynthesis protein) Apr 2008
Automated Process Approved IPR006063 (IPR006063 HisA, bacterial-type) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved PF00977 (PF00977 Histidine biosynthesis protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2006 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2019 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2024 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'- phosphoribosyl)-4-imidazolecarboxamide isomerase Published Annotation - Swiss-Prot Accession Number: P10371 Jan 2006
Person Uncurated alternate product name N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0006725: Trusted threshold=662.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000751
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00977 Histidine biosynthesis protein Protein Sequence Similarity - PFAM Model Name: PF00977
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006063 HisA, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR006063
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006062 Histidine biosynthesis protein Protein Sequence Similarity - InterPro Domain: IPR006062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.3.1.16 Published Annotation - Swiss-Prot Accession Number: P10371 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.16 (metabolism; building block biosynthesis; amino acids; histidine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946521 Published Annotation - Entrez Gene Database ID: 946521
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P10371 Published Annotation - Swiss-Prot Accession Number: P10371 Jan 2005
Automated Process Approved db xref GI:87082028 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10371 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006725 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10444 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Histidine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000105 - histidine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75085.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000751 hisA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001535 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000251 hisA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000549 hisA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001414 hisA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000871 hisA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000735 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000351 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129374 hisA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104824 hisA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104211 hisA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002789 hisA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001253 hisA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002894 hisA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003571 hisA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007170 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019060 hisA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001801 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003489 hisA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302775 hisA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002400 hisA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001404 hisA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003523 hisA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004980 hisA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002085 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009364 hisA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001974 hisA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002344 hisA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007262 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008405 hisA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008022 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078685 hisA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002361 hisA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002689 hisA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010364 hisA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006383 hisA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002304 hisA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006752 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004379 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006357 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010627 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008836 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009755 hisA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007797 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008141 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005643 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009457 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009187 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009660 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006837 hisA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008985 hisA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026910 hisA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004845 hisA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006835 hisA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002570 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001900 hisA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002079 hisA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002500 hisA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002437 hisA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002398 hisA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002389 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176526 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002338 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001035 hisA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132829 hisA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001985 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002304 hisA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001398 hisA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002177 hisA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002488 hisA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000812 hisA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007018 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001847 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001963 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001803 hisA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002235 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002544 hisA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001603 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010307 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001335 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289494 hisA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005717 hisA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062851 hisA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001478 hisA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003945 hisA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001986 hisA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006564 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140337 hisA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005413 hisA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006370 hisA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000840 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002449 hisA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006681 hisA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006614 hisA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006287 hisA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004340 hisA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006664 hisA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005964 hisA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006410 hisA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004046 hisA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005793 hisA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006618 hisA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007654 hisA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000795 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000795 hisA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000964 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006853 hisA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006304 hisA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006383 hisA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005606 hisA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109619 hisA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082510 hisA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002574 hisA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096653 hisA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007206 hisA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004718 hisA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005352 hisA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004199 hisA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265649 hisA CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000927 hisA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006609 hisA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003754 hisA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002554 hisA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073321 hisA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088372 hisA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002238 hisA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002299 hisA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001205 VC1137 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002695 hisA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000446 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007960 hisA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000522 hisA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001363 hisA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001325 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237678 hisA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007294 hisA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001022 hisA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005673 hisA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001829 hisA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120414 hisA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005679 hisA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004365 hisA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002580 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008969 hisA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004903 hisA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032358 hisA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007757 hisA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002928 hisA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001713 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006571 hisA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006416 hisA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001629 hisA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001978 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002999 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016271 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003167 hisA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2090125 to 2100862
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006713hisGCDSforward20901922091091Upstream
ABE-0006715hisDCDSforward20910972092401Upstream
ABE-0006717hisCCDSforward20923982093468Upstream
ABE-0006720hisBCDSforward20934682094535Upstream
ABE-0006722hisHCDSforward20945352095125Overlaps Upstream
ABE-0006725hisACDSforward20951252095862Matches
ABE-0006727hisFCDSforward20958442096620Overlaps Downstream
ABE-0006729hisICDSforward20966142097225Downstream
ABE-0285481repeat_regionforward20972372097266Downstream
ABE-0006731wzzBCDScomplement20973212098301Downstream
ABE-0006734ugdCDScomplement20984472099613Downstream
ABE-0006737gndCDScomplement20998622101268Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.