Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006727 (hisF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006727 showshow history
Names
hisF JW2007 ECK2020 b2025
Product
imidazole glycerol phosphate synthase catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2095844 2096620 777 259
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000752
EnteroFam0006727: Trusted threshold=752.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006062 (IPR006062 Histidine biosynthesis protein) Apr 2008
Automated Process Approved IPR004651 (IPR004651 Histidine biosynthesis, HisF) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF00977 (PF00977 Histidine biosynthesis protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009382 imidazoleglycerol-phosphate synthase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000107 imidazoleglycerol-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2020 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2007 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2025 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product imidazole glycerol phosphate synthase catalytic subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name imidazole glycerol phosphate synthase, subunit with HisH Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006727: Trusted threshold=752.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000752
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00977 Histidine biosynthesis protein Protein Sequence Similarity - PFAM Model Name: PF00977
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006062 Histidine biosynthesis protein Protein Sequence Similarity - InterPro Domain: IPR006062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004651 Histidine biosynthesis, HisF Protein Sequence Similarity - InterPro Domain: IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.3.- Published Annotation - Swiss-Prot Accession Number: P60664 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.16 (metabolism; building block biosynthesis; amino acids; histidine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006727 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10448 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P60664 Published Annotation - Swiss-Prot Accession Number: P60664 Jan 2006
Automated Process Approved db xref GI:1788336 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946516 Published Annotation - Entrez Gene Database ID: 946516
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60664 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Histidine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000105 - histidine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75086.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009382 imidazoleglycerol-phosphate synthase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000107 imidazoleglycerol-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004651
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000752 hisF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001534 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000300 hisF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000500 hisF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001411 hisF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000620 hisF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000736 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000350 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129375 hisF CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104825 hisF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104212 hisF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002790 hisF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001252 hisF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002895 hisF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003572 hisF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007171 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019061 hisF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001800 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003490 hisF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302778 hisF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002401 hisF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001403 hisF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003522 hisF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004981 hisF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002086 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009363 hisF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001975 hisF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002343 hisF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007261 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008404 hisF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008021 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078686 hisF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002362 hisF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002690 hisF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010365 hisF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006384 hisF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002305 hisF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006753 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004380 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006358 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010628 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008837 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009754 hisF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007798 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008140 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005644 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009458 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009188 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009661 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006836 hisF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008986 hisF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026911 hisF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004846 hisF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006836 hisF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002569 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001901 hisF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002080 hisF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002501 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002436 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002399 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002390 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002339 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001034 hisF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132830 hisF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001984 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002305 hisF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001397 hisF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002176 hisF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002489 hisF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000813 hisF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007019 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001848 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001964 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001804 hisF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002234 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002545 hisF CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001602 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010308 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001334 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289495 hisF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005718 hisF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062852 hisF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001477 hisF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003944 hisF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001987 hisF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006563 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140334 hisF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005412 hisF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006371 hisF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000839 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002450 hisF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006682 hisF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006616 hisF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006289 hisF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004339 hisF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006665 hisF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005965 hisF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006411 hisF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004047 hisF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005794 hisF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006619 hisF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007653 hisF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000794 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000794 hisF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000963 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006854 hisF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006305 hisF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006384 hisF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005607 hisF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109622 hisF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082509 hisF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002575 hisF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096656 hisF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007205 hisF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004717 hisF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005353 hisF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004200 hisF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265648 hisF CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000928 hisF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006608 hisF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003753 hisF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002553 hisF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073322 hisF CDS
Person Approved Go view Shigella flexneri 301 ABT-0088373 hisF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002239 hisF CDS
Person Approved Go view Shigella sonnei 046 ADD-0002300 hisF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001206 VC1138 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002694 hisF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000445 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007963 hisF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000523 hisF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001362 hisF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001326 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237677 hisF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001021 hisF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005672 hisF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001828 hisF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120412 hisF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005678 hisF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004366 hisF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002579 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008968 hisF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004904 hisF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032359 hisF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007758 hisF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002929 hisF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001714 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006572 hisF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006417 hisF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001628 hisF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001977 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003000 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016275 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003166 hisF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20583mutantTn5 InsertionRequest the StrainABE-0006727hisFhisF::Tn5KAN-2 at position 391 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2090844 to 2101620
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006713hisGCDSforward20901922091091Upstream
ABE-0006715hisDCDSforward20910972092401Upstream
ABE-0006717hisCCDSforward20923982093468Upstream
ABE-0006720hisBCDSforward20934682094535Upstream
ABE-0006722hisHCDSforward20945352095125Upstream
ABE-0006725hisACDSforward20951252095862Overlaps Upstream
ABE-0006727hisFCDSforward20958442096620Matches
ABE-0006729hisICDSforward20966142097225Overlaps Downstream
ABE-0285481repeat_regionforward20972372097266Downstream
ABE-0006731wzzBCDScomplement20973212098301Downstream
ABE-0006734ugdCDScomplement20984472099613Downstream
ABE-0006737gndCDScomplement20998622101268Downstream
ABE-0285061wbbL_2CDSpcomplement21013962101677Downstream
ABE-0285104wbbLpseudogenecomplement21013962101744(Interval #2) Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.