Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006729 (hisI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006729 showshow history
Names
hisI hisIE hisE JW2008 ECK2021 b2026
Product
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2096614 2097225 612 204
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000753
EnteroFam0006729: Trusted threshold=561.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002496 (IPR002496 Phosphoribosyl-AMP cyclohydrolase domain) Apr 2008
Automated Process Approved IPR008179 (IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase) Apr 2008
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR021130 (IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like) Jul 2018
Automated Process Approved IPR038019 (IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily) Jul 2018
Automated Process Approved PF01503 (PF01503 Phosphoribosyl-ATP pyrophosphohydrolase) Jul 2018
Automated Process Approved PF01502 (PF01502 Phosphoribosyl-AMP cyclohydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002496
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004636 phosphoribosyl-ATP diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004635 phosphoribosyl-AMP cyclohydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002496
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisI Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2021 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2008 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym hisE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym hisIE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2026 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Person Uncurated alternate product name bifunctional: phosphoribosyl-AMP cyclohydrolase (N-terminal); phosphoribosyl-ATP pyrophosphatase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0006729: Trusted threshold=561.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000753
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase Protein Sequence Similarity - InterPro Domain: IPR008179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002496 Phosphoribosyl-AMP cyclohydrolase domain Protein Sequence Similarity - InterPro Domain: IPR002496
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like Protein Sequence Similarity - InterPro Domain: IPR021130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR038019
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01502 Phosphoribosyl-AMP cyclohydrolase Protein Sequence Similarity - PFAM Model Name: PF01502
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Protein Sequence Similarity - PFAM Model Name: PF01503
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.4.19 Published Annotation - Swiss-Prot Accession Number: P06989 Feb 2006
Person Approved EC number 3.6.1.31 Published Annotation - Swiss-Prot Accession Number: P06989 Feb 2006
Person Uncurated MultiFun 1.5.1.16 (metabolism; building block biosynthesis; amino acids; histidine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946515 Published Annotation - Entrez Gene Database ID: 946515
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P06989 Published Annotation - Swiss-Prot Accession Number: P06989 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06989 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006729 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367128 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10451 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Histidine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000105 - histidine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75087.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002496
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004635 phosphoribosyl-AMP cyclohydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002496
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004636 phosphoribosyl-ATP diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000753 hisI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001533 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000303 hisI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000669 hisI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001359 hisI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000619 hisI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000737 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000349 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129376 hisI CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104826 hisI CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104213 hisI CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002791 hisE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001251 hisE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002896 hisE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003573 hisE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007172 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019062 hisI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001799 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003491 hisE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302780 hisI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002402 hisI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001402 hisI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003521 hisIE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004982 hisIE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002087 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009362 hisIE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001976 hisI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002342 hisE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007260 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008403 hisIE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008020 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078687 hisI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002363 hisE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002691 hisE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010366 hisIE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006385 hisIE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002306 hisI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006754 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004381 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006359 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010629 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008838 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009753 hisIE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007799 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008139 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005645 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009459 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009189 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009662 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006835 hisIE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008987 hisIE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026912 hisI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004847 hisI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006837 hisIE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002568 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001902 hisI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002081 hisI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002502 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002400 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002391 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176529 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002340 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001033 hisIE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132831 hisI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001983 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002306 hisI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001396 hisE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002175 hisE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002490 hisI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000814 hisE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007020 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001849 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001965 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001805 hisI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002233 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002546 hisI CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001601 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010309 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001333 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289496 hisI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005719 hisI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062853 hisI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001485 hisI CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001863 hisI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001988 hisI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006562 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140333 hisI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006372 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000838 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002451 hisI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006683 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006618 hisI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006291 hisI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004338 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006666 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005966 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006412 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004048 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005795 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006620 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007652 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000793 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000793 hisI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000962 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006855 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006306 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006385 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005608 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109625 hisI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082508 hisI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002576 hisI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096659 hisI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007204 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004716 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005354 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004201 hisE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265647 hisI CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000929 hisI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006607 hisIE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003752 hisIE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002552 hisI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073323 hisI CDS
Person Approved Go view Shigella flexneri 301 ABT-0088374 hisI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002240 hisI CDS
Person Approved Go view Shigella sonnei 046 ADD-0002301 hisI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001207 VC1139 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002692 hisI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000444 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007965 hisI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000524 hisI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001361 hisI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001327 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237676 hisI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007296 hisIE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001020 hisI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005671 hisI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001827 hisI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120409 hisI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005677 hisI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004367 hisI CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008967 hisI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004905 hisI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032360 hisI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007759 hisI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002930 hisI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001715 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006573 hisI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006418 hisI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001627 hisI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001976 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003001 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016280 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003165 hisE CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0006729 hisI lambda repressor assay Doodle - bnumber: b2026 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2091614 to 2102225
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006715hisDCDSforward20910972092401Upstream
ABE-0006717hisCCDSforward20923982093468Upstream
ABE-0006720hisBCDSforward20934682094535Upstream
ABE-0006722hisHCDSforward20945352095125Upstream
ABE-0006725hisACDSforward20951252095862Upstream
ABE-0006727hisFCDSforward20958442096620Overlaps Upstream
ABE-0006729hisICDSforward20966142097225Matches
ABE-0285481repeat_regionforward20972372097266Downstream
ABE-0006731wzzBCDScomplement20973212098301Downstream
ABE-0006734ugdCDScomplement20984472099613Downstream
ABE-0006737gndCDScomplement20998622101268Downstream
ABE-0285061wbbL_2CDSpcomplement21013962101677Downstream
ABE-0285104wbbLpseudogenecomplement21013962101744(Interval #2) Downstream
ABE-0006740is_elementforward21017492102943Downstream
ABE-0285482mobile_elementcomplement21017492102943Downstream
ABE-0006742insH7CDScomplement21018952102875Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.