Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006731 (wzzB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006731 showshow history
Names
wzzB ECK2022 JW5836 wzz cld rol b2027
Product
regulator of length of O-antigen component of lipopolysaccharide chains
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2097321 2098301 981 327
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003856 (IPR003856 Polysaccharide chain length determinant N-terminal domain) Apr 2008
Automated Process Approved PF02706 (PF02706 Chain length determinant protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wzzB Published Annotation in EcoGene - EG Number: EG13406 Dec 2004
Person Approved synonym cld Experimental - PubMed ID: 7682279
Reference: Escherichia coli 		Dec 2004
Person Approved synonym ECK2022 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5836 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym rol Experimental - PubMed ID: 1379582
Reference: Escherichia coli 		Dec 2004
Person Approved synonym wzz Published Sequence Analysis - PubMed ID: 9004408 Dec 2004
Person Approved locus tag b2027 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product regulator of length of O-antigen component of lipopolysaccharide chains Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR003856 Polysaccharide chain length determinant N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02706 Chain length determinant protein Protein Sequence Similarity - PFAM Model Name: PF02706
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.3.1 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; O antigen) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13406 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082029 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76372 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76372 Published Annotation - Swiss-Prot Accession Number: P76372 Jan 2005
Automated Process Approved db xref ASAP:ABE-0006731 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946553 Published Annotation - Entrez Gene Database ID: 946553
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function regulator; Outer membrane constituents Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009243 - O antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75088.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006764 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002870 cld CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003007 cld CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008558 cld CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002888 wzzB CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002897 wzzB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003574 wzzB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003519 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004983 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002088 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009361 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001977 cld CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002341 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007259 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008402 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008019 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078688 cld CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002364 wzzB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002692 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010367 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006386 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002307 wzz CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006755 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004382 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006360 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010630 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008839 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009752 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007800 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008138 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005646 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009460 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009190 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009663 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006834 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008988 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026913 cld CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004848 wzzB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002605 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001903 cld CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002082 cld CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002504 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002402 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002392 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176530 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002341 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001032 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132832 cld CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001982 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002307 cld CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001395 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006373 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000837 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002452 wzzB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006684 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006622 wzzB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006296 wzzB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004337 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006667 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005967 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006413 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004049 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005796 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006621 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007651 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000792 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000792 cld CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000961 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006856 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006307 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006386 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005609 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109628 cld CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082507 cld CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002577 wzzB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096661 cld CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007203 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004715 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005355 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000930 wzzB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006606 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003751 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002551 wzzB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073325 cld CDS
Person Approved Go view Shigella flexneri 301 ABT-0088375 cld CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002241 wzzB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002302 cld CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2092321 to 2103301
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006715hisDCDSforward20910972092401Downstream
ABE-0006717hisCCDSforward20923982093468Downstream
ABE-0006720hisBCDSforward20934682094535Downstream
ABE-0006722hisHCDSforward20945352095125Downstream
ABE-0006725hisACDSforward20951252095862Downstream
ABE-0006727hisFCDSforward20958442096620Downstream
ABE-0006729hisICDSforward20966142097225Downstream
ABE-0285481repeat_regionforward20972372097266Downstream
ABE-0006731wzzBCDScomplement20973212098301Matches
ABE-0006734ugdCDScomplement20984472099613Upstream
ABE-0006737gndCDScomplement20998622101268Upstream
ABE-0285061wbbL_2CDSpcomplement21013962101677Upstream
ABE-0285104wbbLpseudogenecomplement21013962101744(Interval #2) Upstream
ABE-0006740is_elementforward21017492102943Upstream
ABE-0285482mobile_elementcomplement21017492102943Upstream
ABE-0006742insH7CDScomplement21018952102875Upstream
ABE-0006744wbbL_1CDSpcomplement21029162103389Upstream
ABE-0285104wbbLpseudogenecomplement21029442103389(Interval #1) Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.