Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006734 (ugd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006734 showshow history
Names
ugd yefA udg pmrE JW2010 ECK2023 pagA b2028
Product
UDP-glucose 6-dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2098447 2099613 1167 389
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014685 (IPR014685 (DEPRECATED) UDP-glucose 6-dehydrogenase, bacterial) Apr 2008
Automated Process Approved IPR014360 (IPR014360 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase) Apr 2008
Automated Process Approved IPR014028 (IPR014028 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain) Apr 2008
Automated Process Approved IPR014026 (IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation) Apr 2008
Automated Process Approved IPR014027 (IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR001732 (IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR017476 (IPR017476 UDP-glucose/GDP-mannose dehydrogenase) Jul 2018
Automated Process Approved IPR036220 (IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF03721 (PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain) Jul 2018
Automated Process Approved PF03720 (PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain) Jul 2018
Automated Process Approved PF00984 (PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001732, IPR014027, IPR014026, IPR017476, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377 Dec 2005
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Annotation - PubMed ID: 8759852 Dec 2005
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0042803 protein homodimerization activity Experimental - PubMed ID: 793622 Dec 2005
Person Approved GO molecular function GO:0003979 UDP-glucose 6-dehydrogenase activity Experimental - PubMed ID: 12851388
Reference: Escherichia coli 		Dec 2005
Person Approved GO molecular function GO:0051287 NAD binding Experimental - PubMed ID: 4568129 Dec 2005
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ugd Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym pagA Protein Sequence Similarity - ASAP FeatureID: ABU-0096663
Reference: Salmonella Typhimurium LT2 		Dec 2005
Person Approved synonym JW2010 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yefA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym udg Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym pmrE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2023 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2028 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-glucose 6-dehydrogenase Experimental - PubMed ID: 12851388
Reference: Escherichia coli 		Dec 2005
Protein Family
Automated Process Approved protein family PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Protein Sequence Similarity - PFAM Model Name: PF03720
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014685 (DEPRECATED) UDP-glucose 6-dehydrogenase, bacterial Protein Sequence Similarity - InterPro Domain: IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014028 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR014028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014360 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR014360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF03721
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Protein Sequence Similarity - PFAM Model Name: PF00984
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Protein Sequence Similarity - InterPro Domain: IPR014026
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR014027
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017476 UDP-glucose/GDP-mannose dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR017476
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036220
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.22 Published Annotation - Swiss-Prot Accession Number: P76373 Feb 2006
Person Approved MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 5.5.5 (cell processes; adaptation to stress; dessication) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment In contrast to Wzc, Ugd is not, or only slowly dephosphorylated by Wzb Experimental - PubMed ID: 12851388
Reference: Escherichia coli K-12 XL1-B 		Dec 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76373 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946571 Published Annotation - Entrez Gene Database ID: 946571
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76373 Published Annotation - Swiss-Prot Accession Number: P76373 Jan 2005
Automated Process Approved db xref ASAP:ABE-0006734 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788340 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function colanic acid biosynthesis Published Annotation - PubMed ID: 8759852 Dec 2005
Person Approved function resistance to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli K-12 		Dec 2005
Person Approved function biosynthesis of D-glucuronic acid component of colanic acid (M antigen) Experimental - PubMed ID: 12851388
Reference: Escherichia coli K-12 XL1-B 		Dec 2005
Person Approved function converts UDP-glucose to UDP-glucuronic acid Experimental - PubMed ID: 12851388
Reference: Escherichia coli K-12 XL1-B 		Dec 2005
Person Approved modification Phosphorylated; by Wzc protein-tyrosine kinase, increases dehydrogenase activity Experimental - PubMed ID: 12851388
Reference: Escherichia coli K-12 XL1-B 		Dec 2005
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved physical properties Molecular weight: 47 kD; for monomer Experimental - PubMed ID: 793622
Reference: Escherichia coli K-12 MC153 		Dec 2005
Person Approved physical properties Km:50.0 microM; for NAD (organsim: Escherichia coli K-12 MC153). Experimental - PubMed ID: 4568129 Dec 2005
Person Approved physical properties Km: 1.0 mM; for UDP-glucose Experimental - PubMed ID: 4568129
Reference: Escherichia coli K-12 MC153 		Dec 2005
Automated Process Approved protein id AAC75089.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by acid stress; induced by acid stress Experimental - PubMed ID: 9573193
Reference: Salmonella Typhimurium UK1 		Aug 2005
Person Approved regulation expression regulated by pmrA; expression requires pmrA Experimental - PubMed ID: 8955299
Reference: Salmonella Typhimurium ATCC14028 		Aug 2005
Person Approved regulation induction in response to acid stress requires phoP Experimental - PubMed ID: 9573193
Reference: Salmonella Typhimurium UK1 		Aug 2005
Person Approved regulation induction in response to acid stress requires pmrA Experimental - PubMed ID: 9573193
Reference: Salmonella Typhimurium UK1 		Aug 2005
Person Approved regulation expression regulated by acid; expression is induced by mild acid stress Experimental - PubMed ID: 8955299
Reference: Salmonella Typhimurium ATCC14028 		Aug 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377 Dec 2005
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001732, IPR014027, IPR014026, IPR017476, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Annotation - PubMed ID: 8759852 Dec 2005
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0051287 NAD binding Experimental - PubMed ID: 4568129 Dec 2005
Person Approved GO molecular function GO:0042803 protein homodimerization activity Experimental - PubMed ID: 793622 Dec 2005
Person Approved GO molecular function GO:0003979 UDP-glucose 6-dehydrogenase activity Experimental - PubMed ID: 12851388
Reference: Escherichia coli 		Dec 2005
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000543 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001310 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000339 ugd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000136 ugd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000239 ugd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000170 ugd CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003631 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004369 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004172 ugd CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002898 ugd CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003576 ugd CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007798 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019487 ugd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001307 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003494 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003518 ugd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004984 ugd CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002089 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009360 ugd CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001978 ugd CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002340 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007258 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008399 ugd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008018 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078689 ugd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002365 ugd CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002693 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010373 ugd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006387 ugd CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002308 ugd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006756 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004383 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006361 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010631 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008840 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009751 ugd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007801 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008137 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005647 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009191 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009664 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006833 ugd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008989 ugd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026914 ugd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004849 ugd CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006850 ugd CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002606 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001904 ugd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002083 ugd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002505 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002403 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002393 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176531 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002342 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001031 ugd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132833 ugd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001981 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002308 ugd CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003332 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002501 ugd CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000817 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005779 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063436 ugd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002696 ugd CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001971 ugd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000412 ugd CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008000 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006374 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000836 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002453 ugd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006685 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006625 udg CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006299 udg CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004336 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006668 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005968 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006414 ugd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004050 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005797 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006622 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007650 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000791 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000791 ugd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000960 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006857 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006308 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006387 ugd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005610 ugd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109629 ugd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082506 ugd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002578 udg CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096663 ugd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007202 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004714 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005356 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268347 ugd CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000935 ugd CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006604 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003750 ugd CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002550 ugd CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0285026 ugd pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0286218 ugd pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0002303 ugd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003673 VCA0780 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016293 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003162 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2093447 to 2104613
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006717hisCCDSforward20923982093468Downstream
ABE-0006720hisBCDSforward20934682094535Downstream
ABE-0006722hisHCDSforward20945352095125Downstream
ABE-0006725hisACDSforward20951252095862Downstream
ABE-0006727hisFCDSforward20958442096620Downstream
ABE-0006729hisICDSforward20966142097225Downstream
ABE-0285481repeat_regionforward20972372097266Downstream
ABE-0006731wzzBCDScomplement20973212098301Downstream
ABE-0006734ugdCDScomplement20984472099613Matches
ABE-0006737gndCDScomplement20998622101268Upstream
ABE-0285061wbbL_2CDSpcomplement21013962101677Upstream
ABE-0285104wbbLpseudogenecomplement21013962101744(Interval #2) Upstream
ABE-0006740is_elementforward21017492102943Upstream
ABE-0285482mobile_elementcomplement21017492102943Upstream
ABE-0006742insH7CDScomplement21018952102875Upstream
ABE-0006744wbbL_1CDSpcomplement21029162103389Upstream
ABE-0285104wbbLpseudogenecomplement21029442103389(Interval #1) Upstream
ABE-0006747wbbKCDScomplement21033912104509Upstream
ABE-0006749wbbJCDScomplement21044942105084Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.