Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006737 (gnd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006737 showshow history
Names
gnd JW2011 ECK2024 b2029
Product
gluconate-6-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2099862 2101268 1407 469
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000754
EnteroFam0006737: Trusted threshold=1371.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012284 (IPR012284 (DEPRECATED) Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension) Apr 2008
Automated Process Approved IPR006113 (IPR006113 6-phosphogluconate dehydrogenase, decarboxylating) Apr 2008
Automated Process Approved IPR006115 (IPR006115 6-phosphogluconate dehydrogenase, NADP-binding) Apr 2008
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR006114 (IPR006114 6-phosphogluconate dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR006184 (IPR006184 6-phosphogluconate-binding site) Apr 2008
Automated Process Approved IPR006183 (IPR006183 6-phosphogluconate dehydrogenase) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF00393 (PF00393 6-phosphogluconate dehydrogenase, C-terminal domain) Jul 2018
Automated Process Approved PF03446 (PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006098 pentose-phosphate shunt GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006114, IPR006113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006114, IPR006113, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009051 pentose-phosphate shunt, oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006115
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006114, IPR006113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gnd Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2011 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2024 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2029 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product gluconate-6-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name gluconate-6-phosphate dehydrogenase, decarboxylating Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name 6-phosphogluconate dehydrogenase, decarboxylating Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0006737: Trusted threshold=1371.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000754
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Protein Sequence Similarity - InterPro Domain: IPR006115
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006113 6-phosphogluconate dehydrogenase, decarboxylating Protein Sequence Similarity - InterPro Domain: IPR006113
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012284 (DEPRECATED) Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension Protein Sequence Similarity - InterPro Domain: IPR012284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006183 6-phosphogluconate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006114 6-phosphogluconate dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006184 6-phosphogluconate-binding site Protein Sequence Similarity - InterPro Domain: IPR006184
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF03446
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.44 Published Annotation - Swiss-Prot Accession Number: P00350 Feb 2006
Person Uncurated MultiFun 1.7.3 (metabolism; central intermediary metabolism; pentose phosphate shunt, non-oxidative branch) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.2 (metabolism; energy metabolism, carbon; pentose phosphate shunt, oxidative branch) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006737 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788341 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00350 Published Annotation - Swiss-Prot Accession Number: P00350 Jan 2005
Automated Process Approved db xref EcoGene:EG10411 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946554 Published Annotation - Entrez Gene Database ID: 946554
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00350 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Oxidative branch, pentose pathway Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch; GO_process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75090.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006098 pentose-phosphate shunt GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006114, IPR006113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009051 pentose-phosphate shunt, oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006114, IPR006113, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006114, IPR006113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006115
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000754 gnd CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001308 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000347 gnd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000314 gnd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000238 gnd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001054 gnd CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003633 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004362 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129377 gnd CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104827 gnd CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104214 gnd CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002793 gnd CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001249 gnd CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002899 gnd CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003580 gnd CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007796 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046981 gnd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001309 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003497 gnd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302785 gnd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002404 gnd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001398 gnd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003517 gnd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004985 gnd CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002090 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009359 gnd CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001979 gnd CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002339 gnd CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007257 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008398 gnd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008017 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078690 gnd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002366 gnd CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002694 gnd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010374 gnd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006388 gnd CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002309 gnd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006757 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004384 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006362 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010632 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008841 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009750 gnd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007802 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008136 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005648 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009463 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009192 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009665 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006832 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008990 gnd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026915 gnd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004850 gnd CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006855 gnd CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002607 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001905 gnd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002084 gnd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002506 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002472 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002404 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002394 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176532 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002343 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001030 gnd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132834 gnd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001979 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002309 gnd CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001394 gnd CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003331 gnd CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002507 gnd CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000818 gnd CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005781 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001853 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001972 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001811 gnd CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002227 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002552 gnd CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001594 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010315 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001329 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289509 gnd CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005723 gnd CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061700 gnd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000841 gnd CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001580 gnd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004176 gnd CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006045 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140323 gnd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006375 gnd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000835 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002454 gnd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006687 gnd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006629 gnd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006303 gnd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004335 gnd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006669 gnd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005969 gnd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006415 gnd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004051 gnd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005798 gnd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006623 gnd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007649 gnd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000790 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000790 gnd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000958 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006858 gnd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006309 gnd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006388 gnd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005611 gnd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109631 gnd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082505 gnd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002579 gnd CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096665 gnd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007201 gnd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004713 gnd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005357 gnd CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004203 gnd CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265481 gnd CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000936 gnd CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006603 gnd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003749 gnd CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002549 gnd CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073327 gnd CDS
Person Approved Go view Shigella flexneri 301 ABT-0256033 gnd CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002243 gnd CDS
Person Approved Go view Shigella sonnei 046 ADD-0002304 gnd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003791 VCA0898 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002677 gnd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000443 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007968 gnd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000525 gnd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001360 gnd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001328 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237675 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007297 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001019 gnd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005670 gnd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001826 gnd CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120406 gnd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005676 gnd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004368 gnd CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008966 gnd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004906 gnd CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032361 gnd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007760 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002931 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001716 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006574 gnd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006419 gnd CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001625 gnd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001975 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003004 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016298 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003161 gnd CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2094862 to 2106268
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006722hisHCDSforward20945352095125Downstream
ABE-0006725hisACDSforward20951252095862Downstream
ABE-0006727hisFCDSforward20958442096620Downstream
ABE-0006729hisICDSforward20966142097225Downstream
ABE-0285481repeat_regionforward20972372097266Downstream
ABE-0006731wzzBCDScomplement20973212098301Downstream
ABE-0006734ugdCDScomplement20984472099613Downstream
ABE-0006737gndCDScomplement20998622101268Matches
ABE-0285061wbbL_2CDSpcomplement21013962101677Upstream
ABE-0285104wbbLpseudogenecomplement21013962101744(Interval #2) Upstream
ABE-0006740is_elementforward21017492102943Upstream
ABE-0285482mobile_elementcomplement21017492102943Upstream
ABE-0006742insH7CDScomplement21018952102875Upstream
ABE-0006744wbbL_1CDSpcomplement21029162103389Upstream
ABE-0285104wbbLpseudogenecomplement21029442103389(Interval #1) Upstream
ABE-0006747wbbKCDScomplement21033912104509Upstream
ABE-0006749wbbJCDScomplement21044942105084Upstream
ABE-0006751wbbICDScomplement21050652106057Upstream
ABE-0006753wbbHCDScomplement21060602107226Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.