Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006751 (wbbI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006751 showshow history
Names
wbbI JW2019 ECK2028 yefG b2034
Product
beta-1,6-galactofuranosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2105065 2106057 993 331
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wbbI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2028 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yefG Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW2019 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2034 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product beta-1,6-galactofuranosyltransferase Published Annotation - EcoCyc Accession Number: EG11983
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name putative Galf transferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name conserved protein Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name d-Galf:alpha-d-Glc beta-1,6-galactofuranosyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006751 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated db xref NCBI_gi:510255 Published Annotation - GenPept Accession Number: 510255 Feb 2005
Automated Process Approved db xref GeneID:947041 Published Annotation - Entrez Gene Database ID: 947041
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Uncurated db xref NCBI_gi:508244 Published Annotation - GenPept Accession Number: 508244 Feb 2005
Automated Process Approved db xref GI:1788346 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37749 Published Annotation - Swiss-Prot Accession Number: P37749 Jan 2005
Automated Process Approved function enzyme; Lipopolysaccharide biosynthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative Galf transferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75095.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0014292 wbbI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0017919 wbbI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0016793 wbbI CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001910 wbbI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002091 wbbI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2100065 to 2111057
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006737gndCDScomplement20998622101268Downstream
ABE-0285061wbbL_2CDSpcomplement21013962101677Downstream
ABE-0285104wbbLpseudogenecomplement21013962101744(Interval #2) Downstream
ABE-0006740is_elementforward21017492102943Downstream
ABE-0285482mobile_elementcomplement21017492102943Downstream
ABE-0006742insH7CDScomplement21018952102875Downstream
ABE-0006744wbbL_1CDSpcomplement21029162103389Downstream
ABE-0285104wbbLpseudogenecomplement21029442103389(Interval #1) Downstream
ABE-0006747wbbKCDScomplement21033912104509Downstream
ABE-0006749wbbJCDScomplement21044942105084Overlaps Downstream
ABE-0006751wbbICDScomplement21050652106057Matches
ABE-0006753wbbHCDScomplement21060602107226Upstream
ABE-0006755glfCDScomplement21072262108329Upstream
ABE-0006757rfbXCDScomplement21083372109584Upstream
ABE-0006759rfbCCDScomplement21095812110138Upstream
ABE-0006762rfbACDScomplement21101382111019Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.