Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006791 (cpsB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006791 showshow history
Names
cpsB mni rfbM JW2034 ECK2043 orf14 manC b2049
Product
mannose-1-phosphate guanyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2123084 2124520 1437 479
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001538 (IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal) Apr 2008
Automated Process Approved IPR005835 (IPR005835 Nucleotidyl transferase domain) Apr 2008
Automated Process Approved IPR006375 (IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase) Apr 2008
Automated Process Approved IPR013794 (IPR013794 (DEPRECATED) Mannose-6-phosphate isomerase, type II) Apr 2008
Automated Process Approved IPR011051 (IPR011051 RmlC-like cupin domain superfamily) Apr 2008
Automated Process Approved IPR014710 (IPR014710 RmlC-like jelly roll fold) Apr 2008
Automated Process Approved IPR029044 (IPR029044 Nucleotide-diphospho-sugar transferases) Jul 2018
Automated Process Approved PF01050 (PF01050 Mannose-6-phosphate isomerase) Jul 2018
Automated Process Approved PF00483 (PF00483 Nucleotidyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0000271 polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006375
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005976 polysaccharide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli 		Sep 2005
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cpsB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2043 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym orf14 Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved synonym manC Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW2034 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym mni Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym rfbM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2049 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product mannose-1-phosphate guanyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal Protein Sequence Similarity - InterPro Domain: IPR001538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029044 Nucleotide-diphospho-sugar transferases Protein Sequence Similarity - InterPro Domain: IPR029044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01050 Mannose-6-phosphate isomerase Protein Sequence Similarity - PFAM Model Name: PF01050
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00483 Nucleotidyl transferase Protein Sequence Similarity - PFAM Model Name: PF00483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014710 RmlC-like jelly roll fold Protein Sequence Similarity - InterPro Domain: IPR014710
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011051 RmlC-like cupin domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005835 Nucleotidyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR006375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013794 (DEPRECATED) Mannose-6-phosphate isomerase, type II Protein Sequence Similarity - InterPro Domain: IPR013794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.7.7.- Published Annotation - Database Name: EC2GO: GO:0016779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.7.22 Published Annotation - Swiss-Prot Accession Number: P24174 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.10 (metabolism; central intermediary metabolism; sugar nucleotide biosynthesis, conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946580 Published Annotation - Entrez Gene Database ID: 946580
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated db xref NCBI_gi:1407616 Published Annotation - GenPept Accession Number: AAC77846 Sep 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24174 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated db xref NCBI_gi:147164 Published Annotation - GenPept Accession Number: AAA02893 Sep 2005
Automated Process Approved db xref EcoGene:EG10161 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24174 Published Annotation - Swiss-Prot Accession Number: P24174 Jan 2005
Automated Process Approved db xref ASAP:ABE-0006791 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function resistance to acid stress Experimental - PubMed ID: 11371548 Nov 2005
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved function resistance to thermal stress Experimental - PubMed ID: 11371548 Nov 2005
Person Approved function resistance to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli 		Sep 2005
Person Approved function colanic acid biosynthesis (M antigen) Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009226 - nucleotide-sugar biosynthetic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75110.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005976 polysaccharide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0000271 polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006375
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli 		Sep 2005
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078692 manC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026919 manC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132841 manC CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002457 rfbM CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000787 rfbM CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109642 rfbM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082502 rfbM CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096673 rfbM CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0285025 manC pseudogene
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125715 manC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030738 manC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001064 manC CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002256 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000110 cpsB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001596 cpsB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000476 cpsB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000087 cpsB CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002917 manC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003601 manC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007802 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015219 cpsB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001304 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003518 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005004 cpsB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002107 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009340 cpsB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001994 cpsB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002321 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007234 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008390 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007999 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078709 cpsB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002377 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002716 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007659 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006408 cpsB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002330 cpsB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006779 manC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004495 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006384 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010654 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008863 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008556 cpsB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007824 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008114 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005671 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009838 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009214 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007373 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006810 cpsB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009012 cpsB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026939 cpsB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004868 manC1_1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002628 cpsB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001925 cpsB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002106 cpsB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002530 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002426 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002412 cpsB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176550 cpsB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002363 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001012 cpsB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132859 cpsB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001954 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002330 cpsB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001392 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000835 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008266 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001979 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002563 manC CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0006897 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061694 rfbM CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003670 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006040 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001261 algA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006399 cpsB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000825 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002469 cpsB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006712 cpsB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006704 manC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006375 manC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004309 cpsB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006693 cpsB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005993 cpsB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006439 cpsB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004078 cpsB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005825 cpsB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006650 cpsB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007622 cpsB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000764 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000761 cpsB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000932 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006882 cpsB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006333 cpsB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006417 cpsB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005640 cpsB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109694 cpsB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082480 cpsB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002604 manC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096733 cpsB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004693 cpsB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005381 cpsB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004214 CDS
Person Approved Go view Shigella boydii 227 ADV-0000954 cpsB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006584 cpsB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003730 cpsB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073351 cpsB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088397 cpsB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002260 cpsB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002306 cpsB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000257 VC0241 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000437 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008922 manC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000534 manC1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001391 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005362 manC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003116 manC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008481 manC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000419 manC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125715 manC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007551 manC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007973 manC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002352 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005058 manC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004556 manC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030738 manC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008796 manC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001202 manC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003286 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005206 manC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007045 manC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001064 manC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003774 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016378 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003141 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20597mutantTn5 InsertionRequest the StrainABE-0006791cpsBcpsB::Tn5KAN-2 at position 965 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2118084 to 2129520
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006780wcaKCDScomplement21171242118404Downstream
ABE-0285483repeat_regionforward21184662118651Downstream
ABE-0006783wzxCCDScomplement21186802120158Downstream
ABE-0006785wcaJCDScomplement21201602121554Downstream
ABE-0006788cpsGCDScomplement21216092122979Downstream
ABE-0006791cpsBCDScomplement21230842124520Matches
ABE-0006794wcaICDScomplement21245232125746Upstream
ABE-0006796gmmCDScomplement21257432126222Upstream
ABE-0006801fclCDScomplement21262252127190Upstream
ABE-0006803gmdCDScomplement21271932128314Upstream
ABE-0006805wcaFCDScomplement21283402128888Upstream
ABE-0006807wcaECDScomplement21289042129650Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.