Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006801 (fcl) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006801 showshow history
Names
fcl wcaG yefB JW2037 ECK2046 orf11 orf0.9 b2052
Product
GDP-L-fucose synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2126225 2127190 966 322
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01370 (PF01370 NAD dependent epimerase/dehydratase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0042350 GDP-L-fucose biosynthetic process Experimental - PubMed ID: 9473059 Aug 2005
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli
Sep 2005
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Sequence Analysis - PubMed ID: 8759852 Aug 2005
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Approved GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Experimental - PubMed ID: 9525924
Reference: Escherichia coli
Aug 2005
Person Approved GO molecular function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Experimental - PubMed ID: 9525924
Reference: Escherichia coli
Aug 2005
Person Approved GO molecular function GO:0050661 NADP binding Experimental - PubMed ID: 9761875
Reference: Escherichia coli
Aug 2005
Person Approved GO molecular function GO:0042803 protein homodimerization activity Experimental - PubMed ID: 9761875
Reference: Escherichia coli
Aug 2005
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fcl Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym orf0.9 Published Sequence Analysis - PubMed ID: 7815923 Sep 2005
Person Approved synonym orf11 Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved synonym wcaG Published Sequence Analysis - PubMed ID: 8759852 Jan 2006
Automated Process Approved synonym yefB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW2037 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2046 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2052 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product GDP-L-fucose synthase Experimental - PubMed ID: 9473059 Jan 2006
Person Approved alternate product name bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved alternate product name GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase Published Annotation - Web Resource URL: http://www.chem.qmul.ac.uk/iubmb/enzyme/EC1/1/1/271.html Nov 2005
Person Approved alternate product name GMER Experimental - PubMed ID: 11030750
Reference: Escherichia coli
Nov 2005
Protein Family
Automated Process Approved protein family PF01370 NAD dependent epimerase/dehydratase family Protein Sequence Similarity - PFAM Model Name: PF01370
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 1.1.1.271 Published Annotation - Swiss-Prot Accession Number: P32055 Feb 2006
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved comment The epimerase and reduction reactions occur at the same active site. Experimental - PubMed ID: 9862812
Reference: Escherichia coli
Aug 2005
Person Approved comment The gene product has two distinct activities: the epimerization at C-3 and C-5 of GDP-4-keto,6-deoxy-(D)-mannose and the reduction at C-4 of GDP-4-keto,6-deoxy-(L)-glucose. Experimental - PubMed ID: 9525924
Reference: Escherichia coli
Aug 2005
Person Approved comment NADPH is required for the reduction reaction but not for the epimerase reaction. Experimental - PubMed ID: 10480878
Reference: Escherichia coli
Aug 2005
Automated Process Approved db xref ASAP:ABE-0006801 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11788 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788365 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946563 Published Annotation - Entrez Gene Database ID: 946563
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P32055 Published Annotation - Swiss-Prot Accession Number: P32055 Jan 2005
Person Uncurated db xref NCBI_gi:1407613 Published Annotation - GenPept Accession Number: AAC77843 Sep 2005
Person Approved function resistance to acid stress Experimental - PubMed ID: 11371548 Nov 2005
Person Approved function resistance to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli
Sep 2005
Person Approved function resistance to thermal stress Experimental - PubMed ID: 11371548 Nov 2005
Person Approved function colanic acid biosynthesis (M antigen) Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved function second and third of three steps in the biosynthetic pathway from GDP-(D)-mannose to GDP-(L)-fucose Experimental - PubMed ID: 9473059
Reference: Escherichia coli
Aug 2005
Person Approved function biosynthesis of L-fucose component of colanic acid (M antigen) Published Sequence Analysis - PubMed ID: 8759852 Aug 2005
Person Approved function converts GDP-4-keto,6-deoxy-(D)-mannose to GDP-(L)-fucose via a GDP-4-keto,6-deoxy-(L)-glucose intermediate Experimental - PubMed ID: 9473059
Reference: Escherichia coli
Aug 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved physical properties Vmax: 363.5 +/- 21.2 micromol/min/mg; for NADPH and GDP-4-keto,6-deoxy-(D)-mannose Experimental - PubMed ID: 10480878
Reference: Escherichia coli
Aug 2005
Person Approved physical properties Km: 38.6 +/- 4.4 microM; for GDP-4-keto,6-deoxy-(D)-mannose Experimental - PubMed ID: 11021971
Reference: Escherichia coli
Aug 2005
Person Approved physical properties Km: 14.1 +/- 1.3 microM; for NADPH Experimental - PubMed ID: 11021971
Reference: Escherichia coli
Aug 2005
Person Approved physical properties Vmax: 12.32 +/- 0.27 micrmol/min/mg; for NADPH and GDP-4-keto,6-deoxy-(D)-mannose Experimental - PubMed ID: 11021971
Reference: Escherichia coli
Aug 2005
Person Approved physical properties Km: 29 +/- 1.4 microM; for GDP-4-keto,6-deoxy-(D)-mannose Experimental - PubMed ID: 10480878 Aug 2005
Person Approved physical properties Km: 9 +/- 0.8 microM; for NADPH Experimental - PubMed ID: 10480878 Aug 2005
Person Approved physical properties Molecular Weight:70 kD; for homodimer; by SDS-PAGE Experimental - PubMed ID: 9761875
Reference: Escherichia coli
Aug 2005
Automated Process Approved protein id AAC75113.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved structure PDB:1BSV, wt, whole protein, co-crystallized with NADPH:2.20 A; X-ray diffraction. Experimental - PubMed ID: 9862812 Aug 2005
Person Approved structure PDB:1E7Q, mutant; S107A, whole protein, co-crystallized with NADP:1.6 A; X-ray diffraction. Experimental - PubMed ID: 11021971 Aug 2005
Person Approved structure PDB:1BWS, wt, whole protein, co-crystallized with NADPH;2.2A; X-ray diffraction. Experimental - PubMed ID: 9817848
Reference: Escherichia coli
Aug 2005
Person Approved structure PDB:1E7S, mutant; K104R, whole protein, co-crystallized with NADP:1.5 A; X-ray diffraction. Experimental - PubMed ID: 11021971 Aug 2005
Person Approved structure PDB:1E7R, mutant; Y136E, whole protein, co-crystallized with NADP:1.6 A; X-ray diffraction. Experimental - PubMed ID: 11021971 Aug 2005
Person Approved structure PDB:1E6U, wt, whole protein, co-crystallized with NADP:1.45 A; X-ray diffraction. Experimental - PubMed ID: 11021971 Aug 2005
Person Approved structure PDB:1FXS, wt, whole protein, co-crystallized with NADP:2.30 A; X-ray diffraction. Experimental - PubMed ID: 9862812 Aug 2005
Person Approved structure PDB:1GFS, wt, whole protein, pure:2.20 A; X-ray diffraction. Experimental - PubMed ID: 9862812 Aug 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Approved GO biological process GO:0042350 GDP-L-fucose biosynthetic process Experimental - PubMed ID: 9473059 Aug 2005
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Sequence Analysis - PubMed ID: 8759852 Aug 2005
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli
Sep 2005
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Approved GO molecular function GO:0042803 protein homodimerization activity Experimental - PubMed ID: 9761875
Reference: Escherichia coli
Aug 2005
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Experimental - PubMed ID: 9525924
Reference: Escherichia coli
Aug 2005
Person Approved GO molecular function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Experimental - PubMed ID: 9525924
Reference: Escherichia coli
Aug 2005
Person Approved GO molecular function GO:0050661 NADP binding Experimental - PubMed ID: 9761875
Reference: Escherichia coli
Aug 2005
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003732 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002451 fcl CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002739 fcl CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001760 fcl CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002819 fcl CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001227 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002920 fcl CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003604 fcl CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003521 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005007 fcl CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002110 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009337 fcl CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001997 wcaG CDS
Person Approved Go view Escherichia coli ATCC 11775 [T] AMC-0005277 fcl CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007231 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010193 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078712 fcl CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002380 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002719 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006411 fcl CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002333 fcl CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006782 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004498 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006387 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010657 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008866 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008553 fcl CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007827 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008111 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005674 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009841 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009217 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007376 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006807 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009015 fcl CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026942 fcl CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004871 fcl CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002631 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001928 fcl CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002109 fcl CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002533 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002429 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002415 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176553 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002366 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001009 fcl CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132862 fcl CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001951 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002333 wcaG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000838 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003672 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006038 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006402 fcl CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000822 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002472 wcaG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006715 fcl CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006711 wcaG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006382 wcaG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004306 fcl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006696 fcl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005996 fcl CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006442 fcl CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004081 fcl CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005828 fcl CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006653 fcl CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007619 fcl CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000761 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000758 wcaG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000929 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006885 fcl CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006336 fcl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006420 fcl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005643 fcl CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109700 wcaG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082477 wcaG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002607 wcaG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096741 wcaG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007183 fcl CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004690 fcl CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005384 fcl CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000957 wcaG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006581 fcl CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003727 fcl CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073354 wcaG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088400 wcaG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002263 wcaG CDS
Person Approved Go view Shigella sonnei 046 ADD-0002309 fcl CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008925 fcl CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001390 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005361 fcl CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003117 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008483 fcl CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007550 fcl CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002351 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004555 fcl CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001201 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003287 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005205 fcl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007046 fcl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003775 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016393 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003138 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20600mutantTn5 InsertionRequest the StrainABE-0006801fclwcaG::Tn5KAN-I-SceI at position 619 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2121225 to 2132190
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006785wcaJCDScomplement21201602121554Downstream
ABE-0006788cpsGCDScomplement21216092122979Downstream
ABE-0006791cpsBCDScomplement21230842124520Downstream
ABE-0006794wcaICDScomplement21245232125746Downstream
ABE-0006796gmmCDScomplement21257432126222Downstream
ABE-0006801fclCDScomplement21262252127190Matches
ABE-0006803gmdCDScomplement21271932128314Upstream
ABE-0006805wcaFCDScomplement21283402128888Upstream
ABE-0006807wcaECDScomplement21289042129650Upstream
ABE-0006809wcaDCDScomplement21296612130878Upstream
ABE-0006811wcaCCDScomplement21308532132070Upstream
ABE-0006813wcaBCDScomplement21320672132555Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.