Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006803 (gmd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006803 showshow history
Names
gmd yefA yefN JW2038 ECK2047 orf10 orf0.0 b2053
Product
GDP-mannose 4,6-dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2127193 2128314 1122 374
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Apr 2008
Automated Process Approved IPR006368 (IPR006368 GDP-mannose 4,6-dehydratase) Apr 2008
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF16363 (PF16363 GDP-mannose 4,6 dehydratase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli 		Sep 2005
Automated Process Approved GO biological process GO:0019673 GDP-mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0042350 GDP-L-fucose biosynthetic process Experimental - PubMed ID: 9525924
Reference: Escherichia coli 		Nov 2005
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008446 GDP-mannose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0005509 calcium ion binding Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0042803 protein homodimerization activity Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0008446 GDP-mannose 4,6-dehydratase activity Experimental - PubMed ID: 8759852
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0000287 magnesium ion binding Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0050661 NADP binding Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gmd Experimental - PubMed ID: 8759852
Reference: Escherichia coli 		Nov 2005
Automated Process Approved synonym yefN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yefA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2038 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym orf0.0 Published Sequence Analysis - PubMed ID: 7815923 Sep 2005
Person Approved synonym orf10 Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved synonym ECK2047 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2053 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product GDP-mannose 4,6-dehydratase Experimental - PubMed ID: 8759852
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name GDP-D-mannose dehydratase, NAD(P)-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16363 GDP-mannose 4,6 dehydratase Protein Sequence Similarity - PFAM Model Name: PF16363
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006368 GDP-mannose 4,6-dehydratase Protein Sequence Similarity - InterPro Domain: IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.47 Published Annotation - Swiss-Prot Accession Number: P0AC88 Feb 2006
Person Approved MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment enzyme activity inhibited by GDP-L-B-fucose Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC88 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946562 Published Annotation - Entrez Gene Database ID: 946562
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0006803 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788366 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11787 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC88 Published Annotation - Swiss-Prot Accession Number: P0AC88 Jan 2006
Person Uncurated db xref NCBI_gi:1407612 Published Annotation - GenPept Accession Number: AAC77842 Sep 2005
Person Approved function first of three steps in the biosynthetic pathway from GDP-(D)-mannose to GDP-(L)-fucose Experimental - PubMed ID: Sullivan 1998
Reference: Escherichia coli 		Nov 2005
Person Approved function converts GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose Experimental - PubMed ID: 8759852
Reference: Escherichia coli 		Nov 2005
Person Approved function resistance to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli 		Sep 2005
Person Approved function resistance to thermal stress Experimental - PubMed ID: 11371548 Nov 2005
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved function colanic acid biosynthesis (M antigen) Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Approved function resistance to acid stress Experimental - PubMed ID: 11371548 Nov 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0009435 - NAD biosynthetic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved physical properties Km: 38 +/- 2 microM; for NADP at pH 7.0. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties pH optimum: 8.0. Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Molecular Weight: 42 kD; by SDS-PAGE. Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Km: 280 +/- 12 microM; for GDP-mannose at pH 7.0. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Kd: 0.46 +/- 0.1 microM; for NADPH at pH 7.0. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Km: 260 microM; for GDP-mannose at pH 7.0. Experimental - PubMed ID: 9525924
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Ki: 78.9 +/- 10.1 microM; for GDP-fucose at pH 7.0. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Kd: 39.8 +/- 2.8 microM; for GDP-mannose at pH 7.0. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Kd: 1.48 +/- 0.1 microM; for NADP at pH 7.0. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Person Approved physical properties Km: 222 +/- 44 microM; for GDP-mannose at pH 8.0. Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Automated Process Approved protein id AAC75114.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved structure PDB:1DB3 wt, whole protein, pure:2.3 A; X-ray diffraction. Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019673 GDP-mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009269 response to desiccation Experimental - PubMed Central ID: 201377
Reference: Escherichia coli 		Sep 2005
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0042350 GDP-L-fucose biosynthetic process Experimental - PubMed ID: 9525924
Reference: Escherichia coli 		Nov 2005
Person Approved GO biological process GO:0009242 colanic acid biosynthetic process Published Sequence Analysis - PubMed ID: 8759852 Nov 2005
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0008446 GDP-mannose 4,6-dehydratase activity Experimental - PubMed ID: 8759852
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0000287 magnesium ion binding Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0005509 calcium ion binding Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Person Approved GO molecular function GO:0042803 protein homodimerization activity Experimental - PubMed ID: 10673432
Reference: Escherichia coli 		Nov 2005
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008446 GDP-mannose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0050661 NADP binding Experimental - PubMed ID: 9257704
Reference: Escherichia coli 		Nov 2005
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003448 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001844 gmd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002377 gmd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005851 gmd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000209 gmd CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002820 gmd CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001226 gmd CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002921 gmd CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003605 gmd CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015221 gmd CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003522 gmd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005008 gmd CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002111 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009336 gmd CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001998 gmd CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0002318 gmd CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007230 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008388 gmd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010192 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078713 gmd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002381 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002720 gmd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007661 gmd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006412 gmd CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002334 gmd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006783 gmd CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006388 gmd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007828 gmd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026943 gmd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004872 gmd CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002632 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001929 gmd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002110 gmd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002534 gmd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002430 gmd CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002416 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176554 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002367 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001008 gmd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132863 gmd CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002334 gmd CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000839 gmd CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008262 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003673 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006037 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001032 gmd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006403 gmd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000821 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002473 gmd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006716 gmd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006713 gmd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006384 gmd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004305 gmd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006697 gmd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005997 gmd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006443 gmd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004082 gmd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005829 gmd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006654 gmd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007618 gmd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000760 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000757 gmd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000928 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006886 gmd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006337 gmd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006421 gmd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005644 gmd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109702 gmd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082476 gmd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002608 gmd CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096744 gmd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007182 gmd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004689 gmd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005385 gmd CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000958 gmd CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006580 gmd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003726 gmd CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073355 gmd CDS
Person Approved Go view Shigella flexneri 301 ABT-0088401 gmd CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002264 gmd CDS
Person Approved Go view Shigella sonnei 046 ADD-0002310 gmd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000259 VC0243 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000439 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008926 gmd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000531 gmd_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001392 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003118 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002349 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001200 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003288 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007047 gmd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003776 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016399 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003137 gmd CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20601mutantTn5 InsertionRequest the StrainABE-0006803gmdgmd::Tn5KAN-I-SceI at position 211 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2122193 to 2133314
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006788cpsGCDScomplement21216092122979Downstream
ABE-0006791cpsBCDScomplement21230842124520Downstream
ABE-0006794wcaICDScomplement21245232125746Downstream
ABE-0006796gmmCDScomplement21257432126222Downstream
ABE-0006801fclCDScomplement21262252127190Downstream
ABE-0006803gmdCDScomplement21271932128314Matches
ABE-0006805wcaFCDScomplement21283402128888Upstream
ABE-0006807wcaECDScomplement21289042129650Upstream
ABE-0006809wcaDCDScomplement21296612130878Upstream
ABE-0006811wcaCCDScomplement21308532132070Upstream
ABE-0006813wcaBCDScomplement21320672132555Upstream
ABE-0006816wcaACDScomplement21325582133397Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.