Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006840 (udk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006840 showshow history
Names
udk JW2051 ECK2060 b2066
Product
uridine/cytidine kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2142307 2142948 642 214
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000757
EnteroFam0006840: Trusted threshold=627.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006083 (IPR006083 Phosphoribulokinase/uridine kinase) Apr 2008
Automated Process Approved IPR000764 (IPR000764 Uridine kinase-like) Apr 2008
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00485 (PF00485 Phosphoribulokinase / Uridine kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004849 uridine kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name udk Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2051 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2060 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2066 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product uridine/cytidine kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name uridine/cytidine kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006840: Trusted threshold=627.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000757
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000764 Uridine kinase-like Protein Sequence Similarity - InterPro Domain: IPR000764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00485 Phosphoribulokinase / Uridine kinase family Protein Sequence Similarity - PFAM Model Name: PF00485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006083 Phosphoribulokinase/uridine kinase Protein Sequence Similarity - InterPro Domain: IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.48 Published Annotation - Swiss-Prot Accession Number: P0A8F4 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006840 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11701 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A8F4 Published Annotation - Swiss-Prot Accession Number: P0A8F4 Jan 2006
Automated Process Approved db xref GeneID:946597 Published Annotation - Entrez Gene Database ID: 946597
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082034 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8F4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Nucleotide interconversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75127.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004849 uridine kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000757 udk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001314 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000983 udk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001274 udk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000889 udk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001543 udk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003606 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004391 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002833 udk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001212 udk CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002935 udk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003618 udk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007823 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020477 udk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001285 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003537 udk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302875 udk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002437 udk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001370 udk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003499 udk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005021 udk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002124 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009323 udk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002012 udk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002303 udk CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007215 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008367 udk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009328 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078727 udk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002394 udk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002734 udk CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007684 udk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006426 udk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002347 udk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006796 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004516 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006403 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010673 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008882 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008537 udk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007843 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008095 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005690 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009857 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009233 udk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007392 udk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006791 udk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009031 udk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026959 udk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004886 udk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006877 udk CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002645 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001942 udk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002123 udk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002547 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002504 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002443 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002429 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176571 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002380 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000993 udk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132878 udk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001935 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002349 udk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001377 udk CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003347 udk CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002527 udk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000852 udk CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005773 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001880 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001997 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001837 udk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002199 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002581 udk CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001565 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010340 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001304 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289549 udk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005749 udk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061666 udk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000814 udk CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001572 udk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004147 udk CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006011 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140311 udk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006418 udk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000806 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002488 udk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006730 udk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006751 udk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006422 udk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004291 udk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006711 udk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006011 udk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006457 udk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004096 udk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005843 udk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006668 udk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007604 udk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000746 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000744 udk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000913 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006900 udk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006351 udk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006435 udk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005658 udk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109735 udk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082463 udk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002622 udk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096785 udk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007168 udk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004674 udk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005399 udk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004236 udk CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266214 udk CDS
Person Approved Go view Shigella boydii 227 ADV-0000971 udk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006567 udk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003713 udk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002532 udk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073373 udk CDS
Person Approved Go view Shigella flexneri 301 ABT-0088413 udk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002280 udk CDS
Person Approved Go view Shigella sonnei 046 ADD-0002323 udk CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001106 VC1038 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002667 udk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000432 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008002 b2066 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000539 b2066 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001353 udk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001335 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237630 udk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007315 udk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000997 udk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005652 udk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001809 udk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120348 udk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005658 udk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004386 udk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000877 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008948 udk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004925 udk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032378 udk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007778 udk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002952 udk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001737 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006592 udk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006436 udk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001608 udk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001954 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003025 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016455 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003125 udk CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20603mutantTn5 InsertionRequest the StrainABE-0006840udkudk::Tn5KAN-2 at position 385 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2137307 to 2147948
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006830yegHCDSforward21379022139485Downstream
ABE-0285485repeat_regionforward21397022139738Downstream
ABE-0006833asmACDScomplement21397592141612Downstream
ABE-0006835dcdCDScomplement21416342142215Downstream
ABE-0006840udkCDScomplement21423072142948Matches
ABE-0006845dgcECDSforward21432662146583Upstream
ABE-0285486repeat_regionforward21466002146683Upstream
ABE-0006848alkACDScomplement21466922147540Upstream
ABE-0006856yegDCDSforward21476742149026Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.