Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006924 (gatD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006924 showshow history
Names
gatD JW2075 ECK2084 b2091
Product
galactitol-1-phosphate 5-dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2171833 2172873 1041 347
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Apr 2008
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Apr 2008
Automated Process Approved IPR002328 (IPR002328 Alcohol dehydrogenase, zinc-type, conserved site) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR020843 (IPR020843 Polyketide synthase, enoylreductase domain) Jul 2018
Automated Process Approved PF08240 (PF08240 Alcohol dehydrogenase GroES-like domain) Jul 2018
Automated Process Approved PF00107 (PF00107 Zinc-binding dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2084 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2075 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2091 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product galactitol-1-phosphate 5-dehydrogenase Published Annotation - EcoCyc Accession Number: EG12417
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name galactitol-1-phosphate dehydrogenase, NAD-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name galactitol-1-phosphate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00107 Zinc-binding dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00107
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08240 Alcohol dehydrogenase GroES-like domain Protein Sequence Similarity - PFAM Model Name: PF08240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020843 Polyketide synthase, enoylreductase domain Protein Sequence Similarity - InterPro Domain: IPR020843
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.251 Published Annotation - Swiss-Prot Accession Number: P0A9S3 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9S3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9S3 Published Annotation - Swiss-Prot Accession Number: P0A9S3 Jan 2006
Automated Process Approved db xref ASAP:ABE-0006924 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946598 Published Annotation - Entrez Gene Database ID: 946598
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12417 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note galactitol-1-phosphate dehydrogenase; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75152.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006338 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003252 gatD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003535 gatD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007295 gatD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003213 gatD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005046 gatD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002147 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009298 gatD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002047 gatD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002237 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007195 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008559 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008355 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078750 gatD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002417 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002754 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007708 gatD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006488 gatD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002379 gatD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006816 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005782 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006470 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0004997 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008950 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008251 gatD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007910 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008554 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005757 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008293 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009486 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007416 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006724 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009326 gatD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026980 gatD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004914 gatD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006900 gatD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002668 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001965 gatD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002151 gatD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002571 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002479 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002465 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002451 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176599 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0002400 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000972 gatD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132899 gatD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001915 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002371 gatD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003598 gatD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001860 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007615 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003741 gadD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007867 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010092 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009548 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007194 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007915 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006834 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005834 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006297 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007009 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007876 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005188 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003163 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003129 gatD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004087 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008036 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007292 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007521 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007193 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0112264 gatD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084901 gatD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003949 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100139 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005970 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006050 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004603 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000990 gatD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006544 gatD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003646 gatD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002606 gatD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073398 gatD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088430 gatD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002343 gatD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20609mutantTn5 InsertionRequest the StrainABE-0006924gatDgatD::Tn5KAN-2 at position 479 in Plus orientation ,+ pKD460Blattner Laboratory
FB20610mutantTn5 InsertionRequest the StrainABE-0006924gatDgatD::Tn5KAN-2 at position 479 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2166833 to 2177873
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006891trhPCDSforward21656682167029Downstream
ABE-0047258cyaRncRNAforward21671142167200Downstream
ABE-0285489misc_featurecomplement21671982167826Downstream
ABE-0006893ogrKCDScomplement21673022167520Downstream
ABE-0006896yegZpseudogenecomplement21676022167816Downstream
ABE-0006907yegRCDScomplement21679892168306Downstream
ABE-0006911yegSCDSforward21687122169611Downstream
ABE-0285490repeat_regionforward21696502169683Downstream
ABE-0006914gatR_2CDSpcomplement21696932170139Downstream
ABE-0285099gatRpseudogenecomplement21696932170167(Interval #2) Downstream
ABE-0006915mobile_elementforward21701712171428Downstream
ABE-0006917insE-5CDSforward21702362170535Downstream
ABE-0006919insF-5CDSforward21705322171398Downstream
ABE-0006921gatR_1CDSpcomplement21713952171727Downstream
ABE-0285099gatRpseudogenecomplement21714292171727(Interval #1) Downstream
ABE-0006924gatDCDScomplement21718332172873Matches
ABE-0006928gatCpseudogenecomplement21729212174278Upstream
ABE-0006930gatBCDScomplement21742822174566Upstream
ABE-0006932gatACDScomplement21745972175049Upstream
ABE-0006934gatZCDScomplement21750592176321Upstream
ABE-0006938gatYCDScomplement21763502177204Upstream
ABE-0285491repeat_regionforward21774082177484Upstream
ABE-0006941fbaBCDScomplement21775122178564Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.