Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006930 (gatB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006930 showshow history
Names
gatB JW2077 ECK2086 b2093
Product
PTS system galactitol-specific IIB component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2174282 2174566 285 95
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013011 (IPR013011 Phosphotransferase system, EIIB component, type 2) Apr 2008
Automated Process Approved IPR003501 (IPR003501 Phosphotransferase system, EIIB component, type 2/3) Apr 2008
Automated Process Approved IPR036095 (IPR036095 PTS system IIB component-like superfamily) Jul 2018
Automated Process Approved PF02302 (PF02302 PTS system, Lactose/Cellobiose specific IIB subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003501, IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2086 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2077 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2093 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system galactitol-specific IIB component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2022
Person Uncurated alternate product name PTS family enzyme IIB, galactitol-specific Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name galactitol-specific enzyme IIB of phosphotransferase system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR013011 Phosphotransferase system, EIIB component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003501 Phosphotransferase system, EIIB component, type 2/3 Protein Sequence Similarity - InterPro Domain: IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Protein Sequence Similarity - PFAM Model Name: PF02302
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036095 PTS system IIB component-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P37188 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.5 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Galactitol (Gat) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.65 (transport; substrate; galactitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37188 Published Annotation - Swiss-Prot Accession Number: P37188 Jan 2005
Automated Process Approved db xref GeneID:946610 Published Annotation - Entrez Gene Database ID: 946610
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788409 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37188 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006930 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12415 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note galactitol-specific enzyme IIB of phosphotransferase system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75154.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003501, IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006775 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003226 gatB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003554 gatB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007196 gatB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003248 gatB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005048 gatB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002149 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009296 gatB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002049 gatB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002235 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007192 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008557 gatB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008353 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078752 gatB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002419 gatB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002756 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007710 gatB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006490 gatB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002381 gatB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006818 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005784 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006472 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0004999 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008952 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008249 gatB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007912 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008552 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005759 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008295 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009488 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007418 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006722 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009328 gatB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026982 gatB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004916 gatB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006902 gatB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002670 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001967 gatB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002153 gatB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002573 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002467 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002453 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176601 pseudogene
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002402 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000970 gatB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132901 gatB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001913 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002373 gatB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003596 gatB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001858 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007613 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003739 ptkB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007865 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010085 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009541 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007196 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007913 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006832 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005832 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006295 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007007 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007874 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005190 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003161 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003127 gatB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004085 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008034 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007294 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007519 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007191 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0112262 gatB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084899 gatB CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100133 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005972 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006052 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000992 gatB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006542 gatB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003644 gatB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002608 gatB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073403 gatB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088434 gatB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002305 gatB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002345 gatB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2169282 to 2179566
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006911yegSCDSforward21687122169611Downstream
ABE-0285490repeat_regionforward21696502169683Downstream
ABE-0006914gatR_2CDSpcomplement21696932170139Downstream
ABE-0285099gatRpseudogenecomplement21696932170167(Interval #2) Downstream
ABE-0006915mobile_elementforward21701712171428Downstream
ABE-0006917insE-5CDSforward21702362170535Downstream
ABE-0006919insF-5CDSforward21705322171398Downstream
ABE-0006921gatR_1CDSpcomplement21713952171727Downstream
ABE-0285099gatRpseudogenecomplement21714292171727(Interval #1) Downstream
ABE-0006924gatDCDScomplement21718332172873Downstream
ABE-0006928gatCpseudogenecomplement21729212174278Downstream
ABE-0006930gatBCDScomplement21742822174566Matches
ABE-0006932gatACDScomplement21745972175049Upstream
ABE-0006934gatZCDScomplement21750592176321Upstream
ABE-0006938gatYCDScomplement21763502177204Upstream
ABE-0285491repeat_regionforward21774082177484Upstream
ABE-0006941fbaBCDScomplement21775122178564Upstream
ABE-0006946yegTCDSforward21788212180098Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.