Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006932 (gatA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006932 showshow history
Names
gatA JW2081 JW2078 ECK2087 b2094
Product
PTS system galactitol-specific IIA component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2174597 2175049 453 151
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002178 (IPR002178 PTS EIIA type-2 domain) Apr 2008
Automated Process Approved IPR016152 (IPR016152 Phosphotransferase/anion transporter) Jul 2018
Automated Process Approved PF00359 (PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2087 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2078 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2081 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2094 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system galactitol-specific IIA component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2022
Person Approved alternate product name galactitol-specific enzyme IIA of phosphotransferase system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name PTS family enzyme IIA, galactitol-specific Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Protein Sequence Similarity - PFAM Model Name: PF00359
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002178 PTS EIIA type-2 domain Protein Sequence Similarity - InterPro Domain: IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016152 Phosphotransferase/anion transporter Protein Sequence Similarity - InterPro Domain: IPR016152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P69828 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.5 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Galactitol (Gat) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.65 (transport; substrate; galactitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12414 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788410 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946633 Published Annotation - Entrez Gene Database ID: 946633
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69828 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006932 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69828 Published Annotation - Swiss-Prot Accession Number: P69828 Jan 2006
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note galactitol-specific enzyme IIA of phosphotransferase system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75155.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006776 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003251 gatA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003553 gatA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005743 gatA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003233 gatA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005049 gatA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002150 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009295 gatA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002050 gatA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002234 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007191 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008556 gatA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008352 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078753 gatA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002420 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002757 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007711 gatA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006491 gatA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002382 gatA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006819 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005785 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006473 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005000 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008953 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008248 gatA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007913 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008551 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005760 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008296 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009489 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007419 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006721 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009329 gatA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026983 gatA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004917 gatA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006903 gatA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002671 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001968 gatA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002574 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002468 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002454 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176602 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002403 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000969 gatA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132902 gatA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001912 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002374 gatA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003595 gatA CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000993 gatA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006541 gatA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003643 gatA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073404 gatA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088435 gatA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2169597 to 2180049
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006911yegSCDSforward21687122169611Downstream
ABE-0285490repeat_regionforward21696502169683Downstream
ABE-0006914gatR_2CDSpcomplement21696932170139Downstream
ABE-0285099gatRpseudogenecomplement21696932170167(Interval #2) Downstream
ABE-0006915mobile_elementforward21701712171428Downstream
ABE-0006917insE-5CDSforward21702362170535Downstream
ABE-0006919insF-5CDSforward21705322171398Downstream
ABE-0006921gatR_1CDSpcomplement21713952171727Downstream
ABE-0285099gatRpseudogenecomplement21714292171727(Interval #1) Downstream
ABE-0006924gatDCDScomplement21718332172873Downstream
ABE-0006928gatCpseudogenecomplement21729212174278Downstream
ABE-0006930gatBCDScomplement21742822174566Downstream
ABE-0006932gatACDScomplement21745972175049Matches
ABE-0006934gatZCDScomplement21750592176321Upstream
ABE-0006938gatYCDScomplement21763502177204Upstream
ABE-0285491repeat_regionforward21774082177484Upstream
ABE-0006941fbaBCDScomplement21775122178564Upstream
ABE-0006946yegTCDSforward21788212180098Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.