Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006938 (gatY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006938 showshow history
Names
gatY yegF JW5343 ECK2089 b2096
Product
tagatose-1,6-bisphosphate aldolase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2176350 2177204 855 285
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000771 (IPR000771 Fructose-bisphosphate aldolase, class-II) Apr 2008
Automated Process Approved IPR011288 (IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF01116 (PF01116 Fructose-bisphosphate aldolase class-II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771, IPR011288
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0019512 lactose catabolic process via tagatose-6-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0009025 tagatose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011288
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatY Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym yegF Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5343 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2089 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2096 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product tagatose-1,6-bisphosphate aldolase 2 Published Annotation - EcoCyc Accession Number: EG12419
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name tagatose-bisphosphate aldolase 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name tagatose 6-phosphate aldolase 2, subunit with GatZ Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY Protein Sequence Similarity - InterPro Domain: IPR011288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01116 Fructose-bisphosphate aldolase class-II Protein Sequence Similarity - PFAM Model Name: PF01116
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000771 Fructose-bisphosphate aldolase, class-II Protein Sequence Similarity - InterPro Domain: IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.2.- Published Annotation - Swiss-Prot Accession Number: P37192 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0006938 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12419 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082041 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0C8J6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946636 Published Annotation - Entrez Gene Database ID: 946636
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37192 Published Annotation - Swiss-Prot Accession Number: P37192 Jan 2005
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tagatose-bisphosphate aldolase 1; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75157.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0019512 lactose catabolic process via tagatose-6-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000771, IPR011288
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0009025 tagatose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011288
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264488 fba CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002154 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000059 kbaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000109 kbaY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000101 kbaY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002455 gatY CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005051 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002152 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009293 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002052 gatY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002232 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007189 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008554 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008350 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078755 gatY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002422 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002759 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007713 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006493 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002384 gatY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006821 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005787 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006475 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005002 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008955 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008246 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007915 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008549 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005762 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008298 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009491 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007421 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006719 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009331 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026985 gatY CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004919 gatY_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006905 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002673 gatY CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001969 gatY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002159 gatY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002576 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002528 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002470 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002456 gatY CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176604 gatY CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002405 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000967 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132904 gatY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001910 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002376 gatY CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003590 gatY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001855 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060557 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004512 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002399 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004835 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138666 gatY CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007610 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003736 gatY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007862 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010078 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009534 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007202 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007910 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006829 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005826 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006292 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007004 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007871 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005196 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003155 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003121 gatY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004079 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008028 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007516 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007188 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0112248 gatY CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084893 gatY CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003945 gatY_1 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100115 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005975 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006055 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004606 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003223 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000995 gatY CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006539 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003640 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002613 gatY CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073406 gatY CDS
Person Approved Go view Shigella flexneri 301 ABT-0088437 gatY CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002308 gatY CDS
Person Approved Go view Shigella sonnei 046 ADD-0002350 gatY CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20615mutantTn5 InsertionRequest the StrainABE-0006938gatYgatY::Tn5KAN-2 at position 298 in Minus orientation ,+ pKD460Blattner Laboratory
FB20616mutantTn5 InsertionRequest the StrainABE-0006938gatYgatY::Tn5KAN-2 at position 298 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2171350 to 2182204
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006915mobile_elementforward21701712171428Downstream
ABE-0006919insF-5CDSforward21705322171398Downstream
ABE-0006921gatR_1CDSpcomplement21713952171727Downstream
ABE-0285099gatRpseudogenecomplement21714292171727(Interval #1) Downstream
ABE-0006924gatDCDScomplement21718332172873Downstream
ABE-0006928gatCpseudogenecomplement21729212174278Downstream
ABE-0006930gatBCDScomplement21742822174566Downstream
ABE-0006932gatACDScomplement21745972175049Downstream
ABE-0006934gatZCDScomplement21750592176321Downstream
ABE-0006938gatYCDScomplement21763502177204Matches
ABE-0285491repeat_regionforward21774082177484Upstream
ABE-0006941fbaBCDScomplement21775122178564Upstream
ABE-0006946yegTCDSforward21788212180098Upstream
ABE-0006948yegUCDSforward21800952181099Upstream
ABE-0006950yegVCDSforward21810962182061Upstream
ABE-0006952yegWCDScomplement21820352182781Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.