Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0006958 (thiD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0006958 showshow history
Names
thiD thiJ thiN thiA JW2090 ECK2096 b2103
Product
bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2183716 2184516 801 267
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000763
EnteroFam0006958: Trusted threshold=713; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013749 (IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase) Apr 2008
Automated Process Approved IPR004399 (IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase) Apr 2008
Automated Process Approved IPR029056 (IPR029056 Ribokinase-like) Jul 2018
Automated Process Approved PF08543 (PF08543 Phosphomethylpyrimidine kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008972 phosphomethylpyrimidine kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thiD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym thiA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym thiJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2090 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym thiN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2096 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2103 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase); hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphomethylpyrimidine kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0006958: Trusted threshold=713; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000763
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase Protein Sequence Similarity - InterPro Domain: IPR004399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08543 Phosphomethylpyrimidine kinase Protein Sequence Similarity - PFAM Model Name: PF08543
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Protein Sequence Similarity - InterPro Domain: IPR013749
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029056 Ribokinase-like Protein Sequence Similarity - InterPro Domain: IPR029056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.49 Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved EC number 2.7.4.7 Published Annotation - Swiss-Prot Accession Number: P76422 Feb 2006
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76422 Published Annotation - Swiss-Prot Accession Number: P76422 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76422 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14068 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946459 Published Annotation - Entrez Gene Database ID: 946459
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0006958 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788420 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thiamin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphomethylpyrimidine kinase; GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75164.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008972 phosphomethylpyrimidine kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000763 thiD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001007 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000809 thiD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000739 thiD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001021 thiD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000628 thiD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002311 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001465 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002907 thiD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001195 thiD CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002955 thiD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003668 thiD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005798 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018797 thiD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003064 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003565 thiD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302922 thiD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002454 thiD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001357 thiD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003464 thiD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005059 thiD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002159 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009122 thiD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002059 thiD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002224 thiD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007181 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008547 thiD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008343 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078765 thiD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002429 thiD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002766 thiD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007720 thiD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006501 thiD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002391 thiD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006828 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005794 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006482 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005009 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008239 thiD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007922 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008542 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005769 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008305 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009498 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007428 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006712 thiD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009338 thiD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026992 thiD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004926 thiD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006912 thiD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002680 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001976 thiD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002166 thiD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002583 thiD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002521 thiD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002477 thiD CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002463 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176613 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002412 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000960 thiD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132911 thiD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001903 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002384 thiD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000694 thiD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003863 thiD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002558 thiD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000887 thiD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007583 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001899 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002016 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001851 thiD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002183 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002596 thiD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001550 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010359 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001285 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289567 thiD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005769 thiD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063484 thiD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001850 thiD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000821 thiD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000461 thiD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008057 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143230 thiD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006458 thiD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000785 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002529 thiD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006757 thiD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006821 thiD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006488 thiD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004245 thiD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006740 thiD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006040 thiD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006495 thiD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004138 thiD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005887 thiD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006696 thiD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007567 thiD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000706 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000706 thiD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000884 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006929 thiD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006377 thiD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006461 thiD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005684 thiD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109811 thiD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082423 thiD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002651 thiD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096856 thiD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007134 thiD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004639 thiD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005428 thiD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002120 thiD CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001002 thiD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006532 thiD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003633 thiD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002621 thiD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073413 thiD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088442 thiD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002315 thiD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002357 thiD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003746 thiD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001368 VC1296 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000488 thiD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004809 thiD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002587 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003256 thiD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001524 thiD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002814 thiD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002771 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240914 thiD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007209 thiD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002771 thiD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006357 thiD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000694 thiD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124915 thiD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004342 thiD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006062 thiD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003486 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006389 thiD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005759 thiD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031048 thiD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007164 thiD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001541 thiD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002650 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005505 thiD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005161 thiD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002919 thiD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003504 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001539 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016571 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003102 thiD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2178716 to 2189516
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0006946yegTCDSforward21788212180098Downstream
ABE-0006948yegUCDSforward21800952181099Downstream
ABE-0006950yegVCDSforward21810962182061Downstream
ABE-0006952yegWCDScomplement21820352182781Downstream
ABE-0006955yegXCDScomplement21828332183651Downstream
ABE-0006958thiDCDScomplement21837162184516Matches
ABE-0006960thiMCDScomplement21845132185301Overlaps Upstream
ABE-0006964rcnRCDScomplement21855242185796Upstream
ABE-0006968rcnACDSforward21859172186741Upstream
ABE-0006970rcnBCDSforward21869602187298Upstream
ABE-0006972yehACDScomplement21873802188414Upstream
ABE-0006974yehBCDScomplement21884302190910Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.