Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007034 (yehX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007034 showshow history
Names
yehX JW2117 ECK2122 b2129
Product
putative ATP-binding component of an ABC superfamily glycine betaine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2216481 2217407 927 309
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yehX Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2122 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2117 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2129 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative ATP-binding component of an ABC superfamily glycine betaine transporter Published Annotation - EcoCyc Accession Number: EG12010
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Uncurated alternate product name putative glycine/betaine/choline transport protein, osmoprotection (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative ATP-binding component of a transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted transporter subunit: ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.79 (transport; substrate; glycine betaine choline transport) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33360 Published Annotation - Swiss-Prot Accession Number: P33360 Jan 2005
Automated Process Approved db xref GeneID:946659 Published Annotation - Entrez Gene Database ID: 946659
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788450 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33360 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007034 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12010 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding component of a transport system; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75190.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003920 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002191 yehX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002241 yehX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001964 yehX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002381 yehX CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001372 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002880 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002971 cysA_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003686 proV_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003590 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003442 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005084 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002186 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009211 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002082 yehX CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002198 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007147 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006556 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005490 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078795 yehX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002462 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002791 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009135 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005746 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002421 yehX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006854 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000483 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006590 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005118 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010208 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008610 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008094 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009860 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005879 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009593 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010954 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009764 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008894 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009210 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027098 yehX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004954 yehX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006938 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002706 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002001 yehX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002195 yehX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002609 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002553 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002504 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002488 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176639 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002437 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000914 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133024 yehX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000272 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002409 yehX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000883 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002046 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002573 yehX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000904 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000564 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001149 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000592 yehX CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003616 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001305 yehX CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002967 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008973 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002980 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288106 yehX CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004401 yehX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001432 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004651 opuCA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006477 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000767 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002547 yehX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006776 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006884 yehX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006548 yehX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004226 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006759 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006059 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006515 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004157 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005906 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006715 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007548 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000688 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000688 yehX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000863 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006948 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006396 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006480 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005703 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109858 yehX CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082405 yehX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002671 yehX CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096907 yehX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007115 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004621 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005447 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004371 CDS
Person Approved Go view Shigella boydii 227 ADV-0001109 yehX CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006241 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003585 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073469 yehX CDS
Person Approved Go view Shigella flexneri 301 ABT-0088483 yehX CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002370 yehX CDS
Person Approved Go view Shigella sonnei 046 ADD-0002396 yehX CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001183 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001099 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008256 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002284 proV CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002940 proV CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002334 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236422 proV1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005438 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001107 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005294 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002173 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119214 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006050 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004740 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001912 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007706 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005292 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032737 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005443 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003342 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003002 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006493 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006774 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001306 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001568 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003402 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016660 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003080 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20628mutantTn5 InsertionRequest the StrainABE-0007034yehXyehX::Tn5KAN-I-SceI at position 723 in Plus orientation ,+ pKD460Blattner Laboratory
FB20629mutantTn5 InsertionRequest the StrainABE-0007034yehXyehX::Tn5KAN-I-SceI at position 723 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2211481 to 2222407
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007018yehRCDSforward22112252211686Downstream
ABE-0007021yehSCDScomplement22117262212196Downstream
ABE-0007023btsRCDScomplement22122432212962Downstream
ABE-0007027btsSCDScomplement22129592214644Downstream
ABE-0007030mlrACDSforward22148662215597Downstream
ABE-0285063yohOCDSforward22156572215764Downstream
ABE-0007032yehWCDScomplement22157452216476Downstream
ABE-0007034yehXCDScomplement22164812217407Matches
ABE-0007038yehYCDScomplement22174002218557Overlaps Upstream
ABE-0007040osmFCDScomplement22185642219481Upstream
ABE-0285492repeat_regionforward22196252219658Upstream
ABE-0007043bglXCDScomplement22196922221989Upstream
ABE-0007048dldCDSforward22221852223900Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.