Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007040 (osmF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007040 showshow history
Names
osmF JW2119 ECK2124 yehZ b2131
Product
putative periplasmic-binding component of an ABC superfamily transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2218564 2219481 918 306
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007210 (IPR007210 ABC-type glycine betaine transport system, substrate-binding domain) Apr 2008
Automated Process Approved PF04069 (PF04069 Substrate binding domain of ABC-type glycine betaine transport system) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name osmF Published Annotation - PubMed ID: 2821274
Reference: Escherichia coli K-12 		Apr 2009
Person Approved synonym JW2119 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2124 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yehZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2131 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative periplasmic-binding component of an ABC superfamily transporter Published Sequence Analysis - PubMed ID: 15251200
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name putative transport system permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative glycine/betaine/choline transport protein, osmoprotection (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF04069 Substrate binding domain of ABC-type glycine betaine transport system Protein Sequence Similarity - PFAM Model Name: PF04069
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.79 (transport; substrate; glycine betaine choline transport) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12012 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007040 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33362 Published Annotation - Swiss-Prot Accession Number: P33362 Jan 2005
Automated Process Approved db xref GeneID:946681 Published Annotation - Entrez Gene Database ID: 946681
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788452 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport system permease protein; GO_component: GO:0042597 - periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75192.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: no aa change Experimental - GenBank Accession Number: AG613230
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004920 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002327 osmF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002370 osmF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002279 osmF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002401 osmF CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001370 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002882 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002973 opuBC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003688 opuBC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003592 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003440 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005086 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002188 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009209 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002084 yehZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002196 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007143 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006558 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005488 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078797 osmF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002464 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002793 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009137 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005748 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002423 osmF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006856 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000485 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006593 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005120 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010210 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008612 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008096 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009858 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005881 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009595 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010956 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009766 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008892 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009212 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027100 yehZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004956 yehZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006940 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002708 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002003 yehZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002197 yehZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002611 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002555 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002506 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002490 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176641 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002439 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000912 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133026 yehZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000270 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002411 yehZ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000881 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002044 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002575 yehZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000906 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000562 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001147 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000590 yehZ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003618 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001303 yehZ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002969 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008971 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002977 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288108 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004399 yehZ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006479 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000765 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002549 yehZ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006778 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006896 yehZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006559 yehZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004224 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006761 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006061 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006517 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004159 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005908 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006717 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007546 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000686 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000686 yehZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000861 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006950 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006398 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006482 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005705 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109867 yehZ CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082403 yehZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002673 yehZ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096913 yehZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007113 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004619 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005449 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004373 CDS
Person Approved Go view Shigella boydii 227 ADV-0001107 yehZ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003587 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002488 yehZ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073471 yehZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088485 yehZ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002372 yehZ CDS
Person Approved Go view Shigella sonnei 046 ADD-0002398 yehZ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001185 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001097 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008267 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002286 opuBC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002938 opuBC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002332 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003005 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006776 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001304 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001564 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003405 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016673 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000004 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20630mutantTn5 InsertionRequest the StrainABE-0007040osmFyehZ::Tn5KAN-I-SceI at position 392 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2213564 to 2224481
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007027btsSCDScomplement22129592214644Downstream
ABE-0007030mlrACDSforward22148662215597Downstream
ABE-0285063yohOCDSforward22156572215764Downstream
ABE-0007032yehWCDScomplement22157452216476Downstream
ABE-0007034yehXCDScomplement22164812217407Downstream
ABE-0007038yehYCDScomplement22174002218557Downstream
ABE-0007040osmFCDScomplement22185642219481Matches
ABE-0285492repeat_regionforward22196252219658Upstream
ABE-0007043bglXCDScomplement22196922221989Upstream
ABE-0007048dldCDSforward22221852223900Upstream
ABE-0285493repeat_regionforward22239052223932Upstream
ABE-0007050pbpGCDScomplement22239382224870Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.