Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007048 (dld) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007048 showshow history
Names
dld JW2121 ECK2126 ldh b2133
Product
quinone-dependent D-lactate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2222185 2223900 1716 572
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012256 (IPR012256 D-lactate dehydrogenase) Apr 2008
Automated Process Approved IPR015409 (IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal) Apr 2008
Automated Process Approved IPR003006 (IPR003006 Immunoglobulin/major histocompatibility complex, conserved site) Apr 2008
Automated Process Approved IPR006094 (IPR006094 FAD linked oxidase, N-terminal) Apr 2008
Automated Process Approved IPR016164 (IPR016164 FAD-linked oxidase-like, C-terminal) Jul 2018
Automated Process Approved IPR036318 (IPR036318 FAD-binding, type PCMH-like superfamily) Jul 2018
Automated Process Approved PF09330 (PF09330 D-lactate dehydrogenase, membrane binding) Jul 2018
Automated Process Approved PF01565 (PF01565 FAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015409
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006089 lactate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008720 D-lactate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dld Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ldh Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2121 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2126 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2133 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product quinone-dependent D-lactate dehydrogenase Published Annotation - EcoCyc Accession Number: EG10231
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name D-lactate dehydrogenase, NADH-independent, FAD-binding domain Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name D-lactate dehydrogenase, FAD protein, NADH independent Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name D-lactate dehydrogenase, FAD-binding, NADH independent Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR012256 D-lactate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036318 FAD-binding, type PCMH-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036318
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09330 D-lactate dehydrogenase, membrane binding Protein Sequence Similarity - PFAM Model Name: PF09330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01565 FAD binding domain Protein Sequence Similarity - PFAM Model Name: PF01565
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016164 FAD-linked oxidase-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR016164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006094 FAD linked oxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR006094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003006 Immunoglobulin/major histocompatibility complex, conserved site Protein Sequence Similarity - InterPro Domain: IPR003006
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.28 Published Annotation - Swiss-Prot Accession Number: P06149 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946653 Published Annotation - Entrez Gene Database ID: 946653
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P06149 Published Annotation - Swiss-Prot Accession Number: P06149 Jan 2005
Automated Process Approved db xref EcoGene:EG10231 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788454 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06149 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007048 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note D-lactate dehydrogenase, FAD protein, NADH independent; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75194.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015409
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006089 lactate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008720 D-lactate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012256
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063469 dld CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003703 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001783 dld CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001600 dld CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001865 dld CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001667 dld CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001368 dld CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002886 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002975 dld CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003690 dld CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003594 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299975 dld CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001384 dld CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002312 dld CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003438 dld CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005088 dld CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002190 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009206 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002086 dld CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002193 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007140 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006561 dld CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005485 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078800 dld CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002467 dld CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002796 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009139 dld CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005751 dld CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002425 dld CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006859 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000487 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006596 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005123 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010213 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008615 dld CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008099 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009855 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005884 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009598 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010959 dld CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009769 dld CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008889 dld CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009215 dld CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027102 dld CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004961 dld CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006942 dld CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002710 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002005 dld CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002199 dld CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002613 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002557 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002508 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002492 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176643 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002441 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000910 dld CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133028 dld CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000268 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002414 dld CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000862 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003865 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002577 dld CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000910 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000542 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000719 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000584 dld CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003623 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001298 dld CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002974 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008954 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002968 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288113 dld CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004387 dld CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063469 dld CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001805 dld CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000447 dld CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143375 dld CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006481 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000762 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002551 dld CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006780 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006904 dld CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006567 dld CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004222 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006763 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006063 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006519 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004161 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005910 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006719 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007544 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000684 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000684 dld CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000858 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006952 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006400 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006484 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005707 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109874 dld CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082401 dld CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002676 dld CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096921 dld CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007111 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004616 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005451 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004475 CDS
Person Approved Go view Shigella boydii 227 ADV-0001105 dld CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006236 dld CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003590 dld CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002486 dld CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073474 dld CDS
Person Approved Go view Shigella flexneri 301 ABT-0088487 dld CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002374 dld CDS
Person Approved Go view Shigella sonnei 046 ADD-0002400 dld CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001189 dld CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004934 dld CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001277 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008317 dld CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002304 dld CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002920 dld CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002314 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236488 dld CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005460 dld CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001080 dld CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005272 dld CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002192 dld CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119133 dld CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006027 dld CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004762 dld CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001931 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007683 dld CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005314 dld CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032758 dld CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005466 dld CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003369 dld CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003028 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006515 dld CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006795 dld CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001286 dld CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001543 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003427 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016692 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003075 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20633mutantTn5 InsertionRequest the StrainABE-0007048dlddld::Tn5KAN-2 at position 1580 in Plus orientation ,+ pKD460Blattner Laboratory
FB20634mutantTn5 InsertionRequest the StrainABE-0007048dlddld::Tn5KAN-2 at position 1580 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2217185 to 2228900
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007034yehXCDScomplement22164812217407Upstream
ABE-0007038yehYCDScomplement22174002218557Upstream
ABE-0007040osmFCDScomplement22185642219481Upstream
ABE-0285492repeat_regionforward22196252219658Upstream
ABE-0007043bglXCDScomplement22196922221989Upstream
ABE-0007048dldCDSforward22221852223900Matches
ABE-0285493repeat_regionforward22239052223932Downstream
ABE-0007050pbpGCDScomplement22239382224870Downstream
ABE-0007053yohCCDScomplement22250442225631Downstream
ABE-0007059yohDCDSforward22258012226379Downstream
ABE-0285494repeat_regionforward22263852226468Downstream
ABE-0007062yohFCDScomplement22265092227270Downstream
ABE-0007067mdtQ_2CDSpcomplement22273232228411Downstream
ABE-0285124mdtQpseudogenecomplement22273232228758Downstream
ABE-0007071mdtQ_1CDSpcomplement22285492228758Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.