Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007050 (pbpG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007050 showshow history
Names
pbpG yohB psv JW5355 ECK2127 b2134
Product
D-alanyl-D-alanine endopeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2223938 2224870 933 311
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000768
EnteroFam0007050: Trusted threshold=779.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001967 (IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal) Apr 2008
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved PF00768 (PF00768 D-alanyl-D-alanine carboxypeptidase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pbpG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym psv Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yohB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5355 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2127 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2134 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-alanyl-D-alanine endopeptidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and 8 Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name penicillin-binding protein 7 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007050: Trusted threshold=779.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000768
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00768 D-alanyl-D-alanine carboxypeptidase Protein Sequence Similarity - PFAM Model Name: PF00768
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.4.16.4 Published Annotation - Database Name: EC2GO: GO:0009002
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.4.-.- Protein Sequence Similarity - ASAP FeatureID: ABY-0119131
Reference: Yersinia pestis CO92 		Mar 2007
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946662 Published Annotation - Entrez Gene Database ID: 946662
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFI5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007050 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFI5 Published Annotation - Swiss-Prot Accession Number: P0AFI5 Jan 2006
Automated Process Approved db xref EcoGene:EG12015 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note penicillin-binding protein 7; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75195.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001836 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001609 pbpG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001809 pbpG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001777 pbpG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001852 pbpG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000896 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002635 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001366 pbpG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002888 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002977 pbpG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003691 pbpG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007379 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018941 pbpG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001629 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003596 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299967 pbpG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001380 pbpG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002315 pbpG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003436 pbpG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005089 pbpG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002191 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009205 pbpG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002087 pbpG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002192 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007138 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006562 pbpG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005484 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078801 pbpG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002468 pbpG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002797 pbpG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009140 pbpG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005752 pbpG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002426 pbpG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006860 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000488 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006597 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005124 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010214 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008616 pbpG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008100 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009854 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005885 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009599 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010960 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009770 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008888 pbpG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009216 pbpG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027103 pbpG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004962 pbpG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006943 pbpG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002711 pbpG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002006 pbpG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002200 pbpG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002614 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002558 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002509 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002493 pbpG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176644 pbpG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002442 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000909 pbpG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133029 pbpG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000267 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002415 pbpG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003659 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002581 pbpG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000912 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007224 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000538 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000715 pbpG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000582 pbpG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003625 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001296 pbpG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002976 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008952 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002964 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288115 pbpG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004383 pbpG CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063065 pbpG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001669 pbpG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001912 pbpG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004432 pbpG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006322 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002726 pbpG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006482 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000761 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002552 pbpG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006781 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006908 pbpG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006571 pbpG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004221 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006764 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006064 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006520 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004162 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005911 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006720 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007543 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000683 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000683 pbpG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000857 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006953 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006401 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006485 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005708 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0285117 pbpG pseudogene
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0285089 pbpG pseudogene
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002677 pbpG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096923 pbpG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007110 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004615 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005452 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004493 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264554 pbpG CDS
Person Approved Go view Shigella boydii 227 ADV-0001104 pbpG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006235 pbpG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003591 pbpG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002485 pbpG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073475 pbpG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088488 pbpG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002375 pbpG CDS
Person Approved Go view Shigella sonnei 046 ADD-0002401 pbpG CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001190 pbpG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003763 VCA0870 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001278 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008321 pbpG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002305 pbpG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002919 pbpG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002313 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236489 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005461 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001078 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005271 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002193 pbpG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119131 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006026 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004763 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001932 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007682 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005315 pbpG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032759 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005467 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003370 pbpG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003029 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006516 pbpG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006796 pbpG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001285 pbpG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001541 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003428 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016699 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003073 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20635mutantTn5 InsertionRequest the StrainABE-0007050pbpGpbpG::Tn5KAN-2 at position 352 in Minus orientation ,- pKD460Blattner Laboratory
FB20636mutantTn5 InsertionRequest the StrainABE-0007050pbpGpbpG::Tn5KAN-2 at position 352 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2218938 to 2229870
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007040osmFCDScomplement22185642219481Downstream
ABE-0285492repeat_regionforward22196252219658Downstream
ABE-0007043bglXCDScomplement22196922221989Downstream
ABE-0007048dldCDSforward22221852223900Downstream
ABE-0285493repeat_regionforward22239052223932Downstream
ABE-0007050pbpGCDScomplement22239382224870Matches
ABE-0007053yohCCDScomplement22250442225631Upstream
ABE-0007059yohDCDSforward22258012226379Upstream
ABE-0285494repeat_regionforward22263852226468Upstream
ABE-0007062yohFCDScomplement22265092227270Upstream
ABE-0007067mdtQ_2CDSpcomplement22273232228411Upstream
ABE-0285124mdtQpseudogenecomplement22273232228758Upstream
ABE-0007071mdtQ_1CDSpcomplement22285492228758Upstream
ABE-0285222yohPCDSforward22289822229065Upstream
ABE-0007074dusCCDScomplement22294382230385Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.