Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007086 (cdd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007086 showshow history
Names
cdd JW2131 ECK2136 b2143
Product
cytidine/deoxycytidine deaminase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2231844 2232728 885 295
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000772
EnteroFam0007086: Trusted threshold=687; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002125 (IPR002125 Cytidine and deoxycytidylate deaminase domain) Apr 2008
Automated Process Approved IPR013171 (IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain) Apr 2008
Automated Process Approved IPR006263 (IPR006263 Cytidine deaminase, homodimeric) Apr 2008
Automated Process Approved IPR016193 (IPR016193 Cytidine deaminase-like) Jul 2018
Automated Process Approved PF00383 (PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region) Jul 2018
Automated Process Approved PF08211 (PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009972 cytidine deamination GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013171, IPR006263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0046087 cytidine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006263
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004126 cytidine deaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006263
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002125
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002125
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cdd Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2131 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2136 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2143 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cytidine/deoxycytidine deaminase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name cytidine/deoxycytidine deaminase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007086: Trusted threshold=687; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000772
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002125 Cytidine and deoxycytidylate deaminase domain Protein Sequence Similarity - InterPro Domain: IPR002125
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Protein Sequence Similarity - PFAM Model Name: PF08211
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Protein Sequence Similarity - PFAM Model Name: PF00383
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016193 Cytidine deaminase-like Protein Sequence Similarity - InterPro Domain: IPR016193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006263 Cytidine deaminase, homodimeric Protein Sequence Similarity - InterPro Domain: IPR006263
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain Protein Sequence Similarity - InterPro Domain: IPR013171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.5.4.5 Published Annotation - Swiss-Prot Accession Number: P0ABF6 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946663 Published Annotation - Entrez Gene Database ID: 946663
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788465 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10137 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABF6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007086 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABF6 Published Annotation - Swiss-Prot Accession Number: P0ABF6 Jan 2006
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75204.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0009972 cytidine deamination GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013171, IPR006263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0046087 cytidine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006263
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002125
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004126 cytidine deaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006263
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002125
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000772 cdd CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000614 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001125 cdd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001211 cdd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001000 cdd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001391 cdd CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002964 cdd CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001141 cdd CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002991 cdd CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003705 cdd CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007430 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020199 cdd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001578 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003604 cdd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302948 cdd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002464 cdd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001349 cdd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003422 cdd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005098 cdd CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002200 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009196 cdd CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002095 cdd CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002184 cdd CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007129 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006570 cdd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005476 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078811 cdd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002476 cdd CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002805 cdd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009761 cdd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005760 cdd CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002434 cdd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006874 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000502 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006612 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005139 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006580 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008631 cdd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008115 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005817 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005899 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009614 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007182 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009353 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008873 cdd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009231 cdd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027120 cdd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004971 cdd CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006951 cdd CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002720 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002015 cdd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002209 cdd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002625 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002569 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002520 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002502 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176652 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002450 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002289 cdd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133043 cdd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000253 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002423 cdd CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000990 cdd CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002115 cdd CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002592 cdd CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000926 cdd CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007275 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001910 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002027 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001863 cdd CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002170 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002608 cdd CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001539 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010373 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001274 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289596 cdd CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005780 cdd CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063103 cdd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004105 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004384 cdd CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006269 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140290 cdd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006498 cdd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000749 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002568 cdd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006797 cdd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006955 cdd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006614 cdd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004205 cdd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006780 cdd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006080 cdd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006536 cdd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004178 cdd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005927 cdd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006736 cdd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007527 cdd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000668 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000668 cdd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000839 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006968 cdd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006418 cdd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006501 cdd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005724 cdd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109913 cdd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082385 cdd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002694 cdd CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0096967 cdd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007093 cdd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004599 cdd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005468 cdd CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004244 cdd CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266396 cdd CDS
Person Approved Go view Shigella boydii 227 ADV-0001090 cdd CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006225 cdd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003600 cdd CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002474 cdd CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073485 cdd CDS
Person Approved Go view Shigella flexneri 301 ABT-0088496 cdd CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002383 cdd CDS
Person Approved Go view Shigella sonnei 046 ADD-0002409 cdd CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001196 cdd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001303 VC1231 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002656 cdd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000424 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008028 cdd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000547 cdd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001343 cdd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001343 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237595 cdd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007139 cdd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000983 cdd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005641 cdd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001797 cdd CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120292 cdd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005647 cdd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004400 cdd CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002288 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009059 cdd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004936 cdd CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032389 cdd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007792 cdd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002966 cdd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001750 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006602 cdd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006445 cdd CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001599 cdd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001942 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003037 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016726 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003065 cdd CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20645mutantTn5 InsertionRequest the StrainABE-0007086cddcdd::Tn5KAN-2 at position 656 in Plus orientation ,- pKD460Blattner Laboratory
FB20646mutantTn5 InsertionRequest the StrainABE-0007086cddcdd::Tn5KAN-2 at position 656 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2226844 to 2237728
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007062yohFCDScomplement22265092227270Upstream
ABE-0007067mdtQ_2CDSpcomplement22273232228411Upstream
ABE-0285124mdtQpseudogenecomplement22273232228758Upstream
ABE-0007071mdtQ_1CDSpcomplement22285492228758Upstream
ABE-0285222yohPCDSforward22289822229065Upstream
ABE-0007074dusCCDScomplement22294382230385Upstream
ABE-0007078yohJCDSforward22306242231022Upstream
ABE-0007080yohKCDSforward22310192231714Upstream
ABE-0007086cddCDSforward22318442232728Matches
ABE-0285495repeat_regionforward22327362232769Downstream
ABE-0007091sanACDSforward22328782233597Downstream
ABE-0007093yeiSCDSforward22336002233839Downstream
ABE-0007096preTCDSforward22340332235271Downstream
ABE-0007098preACDSforward22352652236500Downstream
ABE-0285496repeat_regionforward22365342236683Downstream
ABE-0007101mglCCDScomplement22367432237753Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.